Hello,
I am trying to access the raw reads for the CAMI_1_low_toy and CAMI_1_low using the jar file and java scripts as described here (https://data.cami-challenge.org/participate) and tried to downloaded everything that was there, but it looks like only the assemblies are there and not the raw short reads. Do you know how I can get access to the short reads?
Here is the command I ran:
java -jar camiClient.jar -d https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/CAMI_I_TOY_LOW . .
And here are the only files that download:
30_profile.tsv
S_S001__genomes_30__insert_180_abundances.tsv.gz
S_S001__genomes_30__insert_180_gs_read_mapping.tsv.gz
S_S001__genomes_30__insert_180_gsa_anonymous.fasta.gz
S_S001__genomes_30__insert_180_gsa_mapping.tsv.gz
Looks like just the assemblies and not the actual short reads files are there.
Hello,
I am trying to access the raw reads for the CAMI_1_low_toy and CAMI_1_low using the jar file and java scripts as described here (https://data.cami-challenge.org/participate) and tried to downloaded everything that was there, but it looks like only the assemblies are there and not the raw short reads. Do you know how I can get access to the short reads?
Here is the command I ran:
java -jar camiClient.jar -d https://openstack.cebitec.uni-bielefeld.de:8080/swift/v1/CAMI_I_TOY_LOW . .
And here are the only files that download:
30_profile.tsv
S_S001__genomes_30__insert_180_abundances.tsv.gz
S_S001__genomes_30__insert_180_gs_read_mapping.tsv.gz
S_S001__genomes_30__insert_180_gsa_anonymous.fasta.gz
S_S001__genomes_30__insert_180_gsa_mapping.tsv.gz
Looks like just the assemblies and not the actual short reads files are there.