get annotation end

[owlang]

Since many users are working with transcript annotations, we should consider adding a Coordinate Manipulation tool that will transform coordinates to take the 5' end or 3' end (or left/right) for a set of annotations.

Checklist

New tools should be written on branches off main. A pull request to the main branch can then be submitted and a reviewer will review the code and accept the merge.

• Write tests for Github Actions (automatic testing)
• Write tool (list changed files)
  • objects.ToolDescriptions.java
  • scripts.Tool_Group.MyTool.java
  • cli.Tool_Group.MyToolCLI.java
  • window_interface.Tool_Group.MyToolWindow.java
  • window_interface.Tool_Group.MyToolOutput.java (Optional)
  • main.ScriptManagerGUI.java
  • main.ScriptManager.java
• Add logging support
• Update documentation (docusaurus)
• Write Galaxy wrapper

Then you can pull your changes into master! 🎉

Developer tip: Copy-paste source code from a similar tool in scriptmanager for the implementation