diff --git a/example_notebooks/000-population_notebook.ipynb b/example_notebooks/000-population_notebook.ipynb new file mode 100644 index 0000000..f14e746 --- /dev/null +++ b/example_notebooks/000-population_notebook.ipynb @@ -0,0 +1,515 @@ +{ + "cells": [ + { + "attachments": {}, + "cell_type": "markdown", + "id": "bef645cf", + "metadata": {}, + "source": [ + "# Population characteristics dataset \n", + "\n", + "### Description\n", + "\n", + "Population characteristics of the Human Phenotype Project study participants.\n", + "\n", + "### Introduction \n", + "\n", + "Population characteristics of the Human Phenotype Project include basic information about the participants regarding sex, living area, visits to the clinical testing center, and communication status.\n", + "\n", + "### Measurement protocol \n", + "\n", + "Upon registration to the Human Phenotype Project, people are assigned with a registration code, which is their ID in the study and provide a telephone number and email by which all communications are conducted. Participants are asked about their date of birth and their sex, and are asked to schedule a visit to the assessment center.\n", + "\n", + "Personal and communication data is saved separately in a secure environment from the population characteristics information, which is saved with the participant designated ID.\n", + "\n", + "### Data availability\n", + " \n", + "* population.parquet - contains sex, month and year of birth per participant\n", + "\n", + "### Relevant links\n", + "\n", + "* [Pheno Knowledgebase](https://knowledgebase.pheno.ai/datasets/000-population.html)\n", + "* [Pheno Data Browser](https://pheno-demo-app.vercel.app/folder/1)" + ] + }, + { + "cell_type": "code", + "execution_count": 1, + "id": "4e9435cd", + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "/home/ec2-user/miniconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n", + " from pandas.core import (\n" + ] + } + ], + "source": [ + "%load_ext autoreload\n", + "%autoreload 2\n", + "\n", + "from pheno_utils import PhenoLoader" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "51cf9e4e", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "PhenoLoader for population with\n", + "4 fields\n", + "1 tables: ['population']" + ] + }, + "execution_count": 2, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "pl = PhenoLoader('population', base_path='s3://pheno-synthetic-data/data')\n", + "pl" + ] + }, + { + "attachments": {}, + "cell_type": "markdown", + "id": "83d13ce2", + "metadata": {}, + "source": [ + "# Data dictionary" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "3a0af1d9", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
| \n", + " | field_string | \n", + "description_string | \n", + "customer_field | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "... | \n", + "ukbb_compatible | \n", + "ukbb_field_id | \n", + "list_of_tags | \n", + "stability | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "browser_image_label | \n", + "browser_image_caption | \n", + "browser_image_fname | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| month_of_birth | \n", + "Month of birth | \n", + "Month of birth | \n", + "ready | \n", + "1 | \n", + "population | \n", + "Categorical (single) | \n", + "Primary | \n", + "042_03 | \n", + "Single | \n", + "category | \n", + "... | \n", + "True | \n", + "52.0 | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| year_of_birth | \n", + "Year of birth | \n", + "Year of birth | \n", + "ready | \n", + "1 | \n", + "population | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "int | \n", + "... | \n", + "True | \n", + "34.0 | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| sex | \n", + "Sex | \n", + "Sex | \n", + "ready | \n", + "1 | \n", + "population | \n", + "Categorical (single) | \n", + "Primary | \n", + "9 | \n", + "Single | \n", + "category | \n", + "... | \n", + "True | \n", + "31.0 | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| study_id | \n", + "Study ID | \n", + "The study identifier | \n", + "ready | \n", + "1 | \n", + "population | \n", + "Categorical (single) | \n", + "Auxiliary | \n", + "000_01 | \n", + "Single | \n", + "category | \n", + "... | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
4 rows × 35 columns
\n", + "| \n", + " | \n", + " | month_of_birth | \n", + "sex | \n", + "study_id | \n", + "year_of_birth | \n", + "
|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 1704566168 | \n", + "10k | \n", + "February | \n", + "Male | \n", + "10k | \n", + "1968 | \n", + "
| 9564032783 | \n", + "10k | \n", + "March | \n", + "Male | \n", + "10k | \n", + "1969 | \n", + "
| 9835639191 | \n", + "10k | \n", + "January | \n", + "Female | \n", + "10k | \n", + "1977 | \n", + "
| 2183955933 | \n", + "10k | \n", + "March | \n", + "Male | \n", + "10k | \n", + "1968 | \n", + "
| 3895522130 | \n", + "10k | \n", + "December | \n", + "Female | \n", + "10k | \n", + "1976 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 5989472762 | \n", + "10k | \n", + "November | \n", + "Male | \n", + "10k | \n", + "1955 | \n", + "
| 6188803594 | \n", + "10k | \n", + "May | \n", + "Female | \n", + "10k | \n", + "1977 | \n", + "
| 3444610916 | \n", + "10k | \n", + "April | \n", + "Male | \n", + "10k | \n", + "1976 | \n", + "
| 1721658019 | \n", + "10k | \n", + "December | \n", + "Male | \n", + "10k | \n", + "1972 | \n", + "
| 4516787031 | \n", + "10k | \n", + "March | \n", + "Male | \n", + "10k | \n", + "1976 | \n", + "
1700 rows × 4 columns
\n", + "| \n", + " | field_string | \n", + "description_string | \n", + "customer_field | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "... | \n", + "ukbb_compatible | \n", + "ukbb_field_id | \n", + "list_of_tags | \n", + "stability | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "browser_image_label | \n", + "browser_image_caption | \n", + "browser_image_fname | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| month_of_birth | \n", + "Month of birth | \n", + "Month of birth | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Categorical (single) | \n", + "Primary | \n", + "042_03 | \n", + "Single | \n", + "category | \n", + "... | \n", + "True | \n", + "52.0 | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| year_of_birth | \n", + "Year of birth | \n", + "Year of birth | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "int | \n", + "... | \n", + "True | \n", + "34.0 | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| sex | \n", + "Sex | \n", + "Sex | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Categorical (single) | \n", + "Primary | \n", + "9 | \n", + "Single | \n", + "category | \n", + "... | \n", + "True | \n", + "31.0 | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| research_stage_type | \n", + "Research stage type | \n", + "The type of the research stage | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Categorical (single) | \n", + "Primary | \n", + "001_01 | \n", + "Single | \n", + "category | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| visit_center | \n", + "Visit center | \n", + "The name of the assessment center | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Categorical (single) | \n", + "Primary | \n", + "001_02 | \n", + "Single | \n", + "category | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| research_stage_timestamp | \n", + "Timestamp of research stage | \n", + "The timestamp of the research stage. For examp... | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Datetime | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| research_stage_date | \n", + "Date of research stage | \n", + "The date of the research stage. For example, i... | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns] | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| age_at_research_stage | \n", + "Age at research stage | \n", + "The age of the participant during the research... | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "float | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| additional_participants_ids | \n", + "Additional participants IDs | \n", + "Additional registration codes from other studies | \n", + "not_ready | \n", + "1 | \n", + "events | \n", + "NaN | \n", + "Auxiliary | \n", + "NaN | \n", + "Single | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| study_id | \n", + "Study ID | \n", + "The study identifier | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Categorical (single) | \n", + "Auxiliary | \n", + "000_01 | \n", + "Single | \n", + "category | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "Timezone | \n", + "Timezone | \n", + "ready | \n", + "1 | \n", + "events | \n", + "Text | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "category | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-01 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
11 rows × 35 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | age_at_research_stage | \n", + "month_of_birth | \n", + "research_stage_date | \n", + "research_stage_timestamp | \n", + "research_stage_type | \n", + "sex | \n", + "study_id | \n", + "timezone | \n", + "visit_center | \n", + "year_of_birth | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 1704566168 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "54.377951 | \n", + "February | \n", + "2021-04-26 06:15:39.347242240 | \n", + "2021-06-09 03:49:31.378405376 | \n", + "call | \n", + "Male | \n", + "10k | \n", + "asia/jerusalem | \n", + "Weizmann | \n", + "1968 | \n", + "
| 9564032783 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "54.970792 | \n", + "March | \n", + "2022-03-23 17:47:16.694559232 | \n", + "2022-04-23 05:54:52.669378304 | \n", + "call | \n", + "Male | \n", + "10k | \n", + "asia/jerusalem | \n", + "Weizmann | \n", + "1969 | \n", + "
| 9835639191 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "46.836505 | \n", + "January | \n", + "2022-04-27 06:15:47.339185664 | \n", + "2022-07-07 02:52:04.993249792 | \n", + "call | \n", + "Female | \n", + "10k | \n", + "asia/jerusalem | \n", + "Weizmann | \n", + "1977 | \n", + "
| 2183955933 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "54.333156 | \n", + "March | \n", + "2023-06-07 22:44:26.642211072 | \n", + "2023-06-02 18:43:48.238084864 | \n", + "call | \n", + "Male | \n", + "10k | \n", + "asia/jerusalem | \n", + "Weizmann | \n", + "1968 | \n", + "
| 3895522130 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "45.543715 | \n", + "December | \n", + "2023-07-14 00:35:37.704252928 | \n", + "2023-08-09 20:11:34.383473152 | \n", + "call | \n", + "Female | \n", + "10k | \n", + "asia/jerusalem | \n", + "Weizmann | \n", + "1976 | \n", + "
| \n", + " | count | \n", + "mean | \n", + "std | \n", + "min | \n", + "25% | \n", + "50% | \n", + "75% | \n", + "max | \n", + "
|---|---|---|---|---|---|---|---|---|
| age_at_research_stage | \n", + "1700.0 | \n", + "53.432351 | \n", + "7.674539 | \n", + "41.618536 | \n", + "46.325481 | \n", + "53.809361 | \n", + "58.898114 | \n", + "72.761353 | \n", + "
| \n", + " | field_string | \n", + "description_string | \n", + "customer_field | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "... | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "browser_image_label | \n", + "browser_image_caption | \n", + "browser_image_fname | \n", + "index | \n", + "nullable | \n", + "coerce | \n", + "required | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| fundus_raw_image_left | \n", + "Fundus raw image (left) | \n", + "Fundus raw image (left) | \n", + "not_ready | \n", + "3 | \n", + "raw_images | \n", + "Image file (individual) | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "string | \n", + "... | \n", + "Both sexes | \n", + "2021-02-17 | \n", + "NaN | \n", + "Fundus image (left) | \n", + "NaN | \n", + "fundus_sample_image_raw_left.png | \n", + "False | \n", + "False | \n", + "False | \n", + "True | \n", + "
| fundus_raw_image_right | \n", + "Fundus raw image (right) | \n", + "Fundus raw image (right) | \n", + "not_ready | \n", + "3 | \n", + "raw_images | \n", + "Image file (individual) | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "string | \n", + "... | \n", + "Both sexes | \n", + "2021-02-17 | \n", + "NaN | \n", + "Fundus image (right) | \n", + "NaN | \n", + "fundus_sample_image_raw_right.png | \n", + "False | \n", + "False | \n", + "False | \n", + "True | \n", + "
| fundus_image_left | \n", + "Fundus image (left) | \n", + "Fundus image (left) | \n", + "ready | \n", + "3 | \n", + "images | \n", + "Image file (individual) | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "string | \n", + "... | \n", + "Both sexes | \n", + "2021-02-17 | \n", + "NaN | \n", + "Fundus image (left) | \n", + "NaN | \n", + "fundus_sample_image_raw_left.png | \n", + "False | \n", + "False | \n", + "False | \n", + "True | \n", + "
| fundus_image_right | \n", + "Fundus image (right) | \n", + "Fundus image (right) | \n", + "ready | \n", + "3 | \n", + "images | \n", + "Image file (individual) | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "string | \n", + "... | \n", + "Both sexes | \n", + "2021-02-17 | \n", + "NaN | \n", + "Fundus image (right) | \n", + "NaN | \n", + "fundus_sample_image_raw_right.png | \n", + "False | \n", + "False | \n", + "False | \n", + "True | \n", + "
| fundus_dicom_left | \n", + "Fundus DICOM (left) | \n", + "Fundus DICOM (left) | \n", + "not_ready | \n", + "3 | \n", + "dicom | \n", + "Dicom file (individual) | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "string | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
5 rows × 39 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | artery_average_width_left | \n", + "artery_average_width_right | \n", + "artery_distance_tortuosity_left | \n", + "artery_distance_tortuosity_right | \n", + "artery_fractal_dimension_left | \n", + "artery_fractal_dimension_right | \n", + "artery_squared_curvature_tortuosity_left | \n", + "artery_squared_curvature_tortuosity_right | \n", + "artery_tortuosity_density_left | \n", + "artery_tortuosity_density_right | \n", + "... | \n", + "vein_squared_curvature_tortuosity_left | \n", + "vein_squared_curvature_tortuosity_right | \n", + "vein_tortuosity_density_left | \n", + "vein_tortuosity_density_right | \n", + "vein_vessel_density_left | \n", + "vein_vessel_density_right | \n", + "vessel_density_left | \n", + "vessel_density_right | \n", + "age | \n", + "sex | \n", + "
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603 rows × 6 columns
\n", + "| \n", + " | \n", + " | \n", + " | vessel_density_left | \n", + "age | \n", + "sex | \n", + "collection_date | \n", + "
|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "0.088169 | \n", + "54.447672 | \n", + "Female | \n", + "2022-09-02 00:24:25.249018112 | \n", + "
| 5027574288 | \n", + "10k | \n", + "0 | \n", + "0.084244 | \n", + "54.169913 | \n", + "Male | \n", + "2022-09-05 22:27:22.026214400 | \n", + "
| 7783260382 | \n", + "10k | \n", + "0 | \n", + "0.071681 | \n", + "45.892093 | \n", + "Male | \n", + "2022-02-12 18:35:25.047434240 | \n", + "
| 1178277844 | \n", + "10k | \n", + "0 | \n", + "0.078115 | \n", + "44.435100 | \n", + "Female | \n", + "2022-06-23 12:19:21.937116928 | \n", + "
| 1622660825 | \n", + "10k | \n", + "0 | \n", + "0.093079 | \n", + "44.621536 | \n", + "Male | \n", + "2022-06-16 04:46:46.675889664 | \n", + "
| \n", + " | count | \n", + "mean | \n", + "std | \n", + "min | \n", + "25% | \n", + "50% | \n", + "75% | \n", + "max | \n", + "
|---|---|---|---|---|---|---|---|---|
| vessel_density_left | \n", + "500.0 | \n", + "0.081407 | \n", + "0.006928 | \n", + "0.050836 | \n", + "0.077697 | \n", + "0.081856 | \n", + "0.086114 | \n", + "0.100053 | \n", + "
| \n", + " | field_string | \n", + "description_string | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "bulk_file_extension | \n", + "relative_location | \n", + "units | \n", + "bulk_dictionary | \n", + "sampling_rate | \n", + "transformation | \n", + "list_of_tags | \n", + "stability | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| timezone | \n", + "Timezone | \n", + "Timezone | \n", + "4 | \n", + "liver_ultrasound | \n", + "Categorical (single) | \n", + "Collection time | \n", + "001_03 | \n", + "Multiple | \n", + "category | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| collection_date | \n", + "Collection date (YYYY-MM-DD) | \n", + "Collection date (YYYY-MM-DD) | \n", + "4 | \n", + "liver_ultrasound | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Multiple | \n", + "datetime64[ns] | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| collection_timestamp | \n", + "Collection timestamp | \n", + "Collection timestamp | \n", + "4 | \n", + "liver_ultrasound | \n", + "Datetime | \n", + "Collection time | \n", + "NaN | \n", + "Multiple | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| liver_ultrasound_qbox_depth | \n", + "Liver ultrasound qbox depth | \n", + "Liver ultrasound ShearWave Elastography (SWE) ... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Auxiliary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "cm | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| liver_ultrasound_qbox_diameter | \n", + "Liver ultrasound qbox diameter | \n", + "Liver ultrasound SWE Q-Box diameter | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Auxiliary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "mm | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| liver_ultrasound_stability_index | \n", + "Liver ultrasound stability index | \n", + "Liver ultrasound stability index tool (SI) for... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Auxiliary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_qbox_minimum | \n", + "Elasticity (qbox minimum) | \n", + "Elasticity, minimum value measured within the ... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_qbox_maximum | \n", + "Elasticity (qbox maximum) | \n", + "Elasticity, maximum value measured within the ... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_qbox_median | \n", + "Elasticity (qbox median) | \n", + "Elasticity, median of the values measured with... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_qbox_standard_deviation | \n", + "Elasticity (qbox standard deviation) | \n", + "Elasticity, standard deviation of values measu... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_qbox_mean | \n", + "Elasticity (qbox mean) | \n", + "Elasticity, mean of the values measured within... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_qbox_minimum | \n", + "Velocity (qbox minimum) | \n", + "Velocity of the shear wave, minimum value meas... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_qbox_maximum | \n", + "Velocity (qbox maximum) | \n", + "Velocity of the shear wave, maximum value meas... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_qbox_median | \n", + "Velocity (qbox median) | \n", + "Velocity of the shear wave, median of the valu... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_qbox_standard_deviation | \n", + "Velocity (qbox standard deviation) | \n", + "Velocity of the shear wave, standard deviation... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_qbox_mean | \n", + "Velocity (qbox mean) | \n", + "Velocity of the shear wave, mean of the values... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| viscosity_qbox_median | \n", + "Viscosity (qbox median) | \n", + "Viscosity, median of the values measured withi... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "Pa.s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| viscosity_qbox_standard_deviation | \n", + "Viscosity (qbox standard deviation) | \n", + "Viscosity, standard deviation of values measur... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "Pa.s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| viscosity_qbox_mean | \n", + "Viscosity (qbox mean) | \n", + "Viscosity, mean of the values measured within ... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "Pa.s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| dispersion_qbox_median | \n", + "Dispersion (qbox median) | \n", + "Shear wave dispersion median of the values mea... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "(m/s)/kHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| dispersion_qbox_standard_deviation | \n", + "Dispersion (qbox standard deviation) | \n", + "Shear wave dispersion standard deviation of th... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "(m/s)/kHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| dispersion_qbox_mean | \n", + "Dispersion (qbox mean) | \n", + "Shear wave dispersion mean of the values measu... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "(m/s)/kHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| attenuation_coefficient_qbox | \n", + "Attenuation coefficient (qbox) | \n", + "Attenuation Plane-Wave Ultrasound (Att.P) coef... | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "dB/cm/MHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| speed_of_sound_qbox | \n", + "Speed of sound (qbox) | \n", + "Sound Speed Plane-Wave Ultrasound (SSp.PLUS) | \n", + "4 | \n", + "liver_ultrasound | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_mean_minimum_of_qboxes | \n", + "Elasticity (mean minimum of qboxes) | \n", + "Elasticity (mean minimum of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_mean_maximum_of_qboxes | \n", + "Elasticity (mean maximum of qboxes) | \n", + "Elasticity (mean maximum of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_mean_median_of_qboxes | \n", + "Elasticity (mean median of qboxes) | \n", + "Elasticity (mean median of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_mean_standard_deviation_of_qboxes | \n", + "Elasticity (mean standard deviation of qboxes) | \n", + "Elasticity (mean standard deviation of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_mean_mean_of_qboxes | \n", + "Elasticity (mean mean of qboxes) | \n", + "Elasticity (mean mean of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_median_minimum_of_qboxes | \n", + "Elasticity (median minimum of qboxes) | \n", + "Elasticity (median minimum of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_median_maximum_of_qboxes | \n", + "Elasticity (median maximum of qboxes) | \n", + "Elasticity (median maximum of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_median_median_of_qboxes | \n", + "Elasticity (median median of qboxes) | \n", + "Elasticity (median median of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_median_standard_deviation_of_qboxes | \n", + "Elasticity (median standard deviation of qboxes) | \n", + "Elasticity (median standard deviation of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| elasticity_median_mean_of_qboxes | \n", + "Elasticity (median mean of qboxes) | \n", + "Elasticity (median mean of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound_aggregated.p... | \n", + "kPa | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_mean_minimum_of_qboxes | \n", + "Velocity (mean minimum of qboxes) | \n", + "Velocity (mean minimum of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_mean_maximum_of_qboxes | \n", + "Velocity (mean maximum of qboxes) | \n", + "Velocity (mean maximum of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_mean_median_of_qboxes | \n", + "Velocity (mean median of qboxes) | \n", + "Velocity (mean median of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_mean_standard_deviation_of_qboxes | \n", + "Velocity (mean standard deviation of qboxes) | \n", + "Velocity (mean standard deviation of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_mean_mean_of_qboxes | \n", + "Velocity (mean mean of qboxes) | \n", + "Velocity (mean mean of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_median_minimum_of_qboxes | \n", + "Velocity (median minimum of qboxes) | \n", + "Velocity (median minimum of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_median_maximum_of_qboxes | \n", + "Velocity (median maximum of qboxes) | \n", + "Velocity (median maximum of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_median_median_of_qboxes | \n", + "Velocity (median median of qboxes) | \n", + "Velocity (median median of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_median_standard_deviation_of_qboxes | \n", + "Velocity (median standard deviation of qboxes) | \n", + "Velocity (median standard deviation of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| velocity_median_mean_of_qboxes | \n", + "Velocity (median mean of qboxes) | \n", + "Velocity (median mean of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "m/s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| viscosity_mean_median_of_qboxes | \n", + "Viscosity (mean median of qboxes) | \n", + "Viscosity (mean median of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "Pa.s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| viscosity_mean_standard_deviation_of_qboxes | \n", + "Viscosity (mean standard deviation of qboxes) | \n", + "Viscosity (mean standard deviation of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "Pa.s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| viscosity_mean_mean_of_qboxes | \n", + "Viscosity (mean mean of qboxes) | \n", + "Viscosity (mean mean of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "Pa.s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| viscosity_median_median_of_qboxes | \n", + "Viscosity (median median of qboxes) | \n", + "Viscosity (median median of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "Pa.s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| viscosity_median_standard_deviation_of_qboxes | \n", + "Viscosity (median standard deviation of qboxes) | \n", + "Viscosity (median standard deviation of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "Pa.s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| viscosity_median_mean_of_median | \n", + "Viscosity (median mean of median) | \n", + "Viscosity (median mean of median) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "Pa.s | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| dispersion_mean_median_of_qboxes | \n", + "Dispersion (mean median of qboxes) | \n", + "Dispersion (mean median of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "(m/s)/kHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| dispersion_mean_standard_deviation_of_qboxes | \n", + "Dispersion (mean standard deviation of qboxes) | \n", + "Dispersion (mean standard deviation of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "(m/s)/kHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| dispersion_mean_mean_of_qboxes | \n", + "Dispersion (mean mean of qboxes) | \n", + "Dispersion (mean mean of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "(m/s)/kHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| dispersion_median_median_of_qboxes | \n", + "Dispersion (median median of qboxes) | \n", + "Dispersion (median median of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "(m/s)/kHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| dispersion_median_standard_deviation_of_qboxes | \n", + "Dispersion (median standard deviation of qboxes) | \n", + "Dispersion (median standard deviation of qboxes) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "(m/s)/kHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| dispersion_median_mean_of_median | \n", + "Dispersion (median mean of median) | \n", + "Dispersion (median mean of median) | \n", + "4 | \n", + "liver_ultrasound_aggregated | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "float | \n", + "NaN | \n", + "liver_ultrasound/liver_ultrasound.parquet | \n", + "(m/s)/kHz | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-08-16 | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | attenuation_coefficient_qbox | \n", + "collection_date | \n", + "collection_timestamp | \n", + "dispersion_mean_mean_of_qboxes | \n", + "dispersion_mean_median_of_qboxes | \n", + "dispersion_mean_standard_deviation_of_qboxes | \n", + "dispersion_median_mean_of_median | \n", + "dispersion_median_median_of_qboxes | \n", + "dispersion_median_standard_deviation_of_qboxes | \n", + "dispersion_qbox_mean | \n", + "... | \n", + "viscosity_mean_median_of_qboxes | \n", + "viscosity_mean_standard_deviation_of_qboxes | \n", + "viscosity_median_mean_of_median | \n", + "viscosity_median_median_of_qboxes | \n", + "viscosity_median_standard_deviation_of_qboxes | \n", + "viscosity_qbox_mean | \n", + "viscosity_qbox_median | \n", + "viscosity_qbox_standard_deviation | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0.392509 | \n", + "2022-02-11 10:42:52.908212224 | \n", + "2020-11-14 16:47:01.060865024 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "2.355153 | \n", + "... | \n", + "NaN | \n", + "0.247785 | \n", + "NaN | \n", + "1.439294 | \n", + "NaN | \n", + "1.554935 | \n", + "1.355579 | \n", + "0.212809 | \n", + "54.447672 | \n", + "Female | \n", + "
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| logging_day | \n", + "2 | \n", + "Logging day per participant | \n", + "Integer indicating which day of logging period | \n", + "ready | \n", + "5.0 | \n", + "diet_logging_events | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "True | \n", + "Data | \n", + "Variable | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| total_logging_days | \n", + "3 | \n", + "Total number of days logged | \n", + "Total number of days diet was logged per resea... | \n", + "ready | \n", + "5.0 | \n", + "diet_logging | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Data | \n", + "Variable | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "4 | \n", + "Timezone | \n", + "Timezone | \n", + "ready | \n", + "5.0 | \n", + "diet_logging | \n", + "Text | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Data | \n", + "Defined | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
5 rows × 42 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | age | \n", + "diet_logging_events | \n", + "food_items | \n", + "raw_diet_logging_events | \n", + "sex | \n", + "total_logging_days | \n", + "usda_sf_legacy_mapping | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 2869902522 | \n", + "10k | \n", + "03_00_call | \n", + "0 | \n", + "48.7 | \n", + "s3://pheno-synthetic-data/data/diet_logging/di... | \n", + "23 | \n", + "s3://pheno-synthetic-data/data/diet_logging/ra... | \n", + "1 | \n", + "7 | \n", + "s3:///pheno-synthetic-data/data/diet_logging/s... | \n", + "
| 1 | \n", + "48.7 | \n", + "s3://pheno-synthetic-data/data/diet_logging/di... | \n", + "15 | \n", + "s3://pheno-synthetic-data/data/diet_logging/ra... | \n", + "1 | \n", + "7 | \n", + "s3:///pheno-synthetic-data/data/diet_logging/s... | \n", + "|||
| 2 | \n", + "48.7 | \n", + "s3://pheno-synthetic-data/data/diet_logging/di... | \n", + "20 | \n", + "s3://pheno-synthetic-data/data/diet_logging/ra... | \n", + "1 | \n", + "7 | \n", + "s3:///pheno-synthetic-data/data/diet_logging/s... | \n", + "|||
| 3 | \n", + "48.7 | \n", + "s3://pheno-synthetic-data/data/diet_logging/di... | \n", + "24 | \n", + "s3://pheno-synthetic-data/data/diet_logging/ra... | \n", + "1 | \n", + "7 | \n", + "s3:///pheno-synthetic-data/data/diet_logging/s... | \n", + "|||
| 4 | \n", + "48.7 | \n", + "s3://pheno-synthetic-data/data/diet_logging/di... | \n", + "8 | \n", + "s3://pheno-synthetic-data/data/diet_logging/ra... | \n", + "1 | \n", + "7 | \n", + "s3:///pheno-synthetic-data/data/diet_logging/s... | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | collection_date | \n", + "short_food_name | \n", + "product_name | \n", + "food_category | \n", + "weight_g | \n", + "calories_kcal | \n", + "carbohydrate_g | \n", + "lipid_g | \n", + "protein_g | \n", + "sodium_mg | \n", + "alcohol_g | \n", + "dietary_fiber_g | \n", + "eaten_in_restaurant | \n", + "local_timestamp | \n", + "timezone | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "logging_day | \n", + "collection_timestamp | \n", + "food_id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 2869902522 | \n", + "10k | \n", + "03_00_call | \n", + "0 | \n", + "1 | \n", + "2022-07-13 08:42:00+03:00 | \n", + "1007294 | \n", + "2022-07-13 | \n", + "Coffee | \n", + "Espresso | \n", + "Drinks | \n", + "40.0 | \n", + "3.6 | \n", + "0.668 | \n", + "0.072 | \n", + "0.048 | \n", + "5.60 | \n", + "NaN | \n", + "0.0000 | \n", + "False | \n", + "2022-07-13 08:42:00 | \n", + "asia/jerusalem | \n", + "
| 1007647 | \n", + "2022-07-13 | \n", + "Roll | \n", + "A white bun | \n", + "Bread | \n", + "50.0 | \n", + "120.0 | \n", + "24.350 | \n", + "1.600 | \n", + "4.300 | \n", + "150.00 | \n", + "0.0 | \n", + "1.7500 | \n", + "False | \n", + "2022-07-13 08:42:00 | \n", + "asia/jerusalem | \n", + "||||||
| 1009748 | \n", + "2022-07-13 | \n", + "Natural Yogurt | \n", + "Yogurt Activia 1.5% | \n", + "milk, cream cheese and yogurts | \n", + "300.0 | \n", + "144.0 | \n", + "12.600 | \n", + "4.500 | \n", + "13.500 | \n", + "270.00 | \n", + "NaN | \n", + "2.7000 | \n", + "False | \n", + "2022-07-13 08:42:00 | \n", + "asia/jerusalem | \n", + "||||||
| 1012463 | \n", + "2022-07-13 | \n", + "Dates | \n", + "Tamar Majhol | \n", + "Fruits | \n", + "40.0 | \n", + "110.8 | \n", + "29.988 | \n", + "0.060 | \n", + "0.724 | \n", + "0.40 | \n", + "NaN | \n", + "2.6800 | \n", + "False | \n", + "2022-07-13 08:42:00 | \n", + "asia/jerusalem | \n", + "||||||
| 2022-07-13 13:00:00+03:00 | \n", + "1009433 | \n", + "2022-07-13 | \n", + "Olive oil | \n", + "Israeli vegetable salad with olive oil | \n", + "Vegetables | \n", + "100.0 | \n", + "54.3 | \n", + "2.770 | \n", + "4.020 | \n", + "0.790 | \n", + "181.65 | \n", + "0.0 | \n", + "0.9646 | \n", + "False | \n", + "2022-07-13 13:00:00 | \n", + "asia/jerusalem | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | collection_date | \n", + "short_food_name | \n", + "product_name | \n", + "food_category | \n", + "weight_g | \n", + "calories_kcal | \n", + "carbohydrate_g | \n", + "lipid_g | \n", + "protein_g | \n", + "sodium_mg | \n", + "alcohol_g | \n", + "dietary_fiber_g | \n", + "eaten_in_restaurant | \n", + "local_timestamp | \n", + "timezone | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "logging_day | \n", + "collection_timestamp | \n", + "food_id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5309837561 | \n", + "10k | \n", + "02_00_visit | \n", + "0.0 | \n", + "0 | \n", + "2022-08-07 19:35:00+03:00 | \n", + "1008856 | \n", + "2022-08-07 | \n", + "Pepper | \n", + "Orange pepper | \n", + "Vegetables | \n", + "166.0 | \n", + "33.200 | \n", + "8.300 | \n", + "0.000 | \n", + "1.6600 | \n", + "0.00 | \n", + "NaN | \n", + "3.32000 | \n", + "False | \n", + "2022-08-07 19:35:00 | \n", + "asia/jerusalem | \n", + "
| 1009496 | \n", + "2022-08-07 | \n", + "Yellow Cheese | \n", + "Emek Dak yellow cheese 28% | \n", + "Hard cheese | \n", + "250.0 | \n", + "862.000 | \n", + "0.500 | \n", + "70.000 | \n", + "57.5000 | \n", + "1675.00 | \n", + "NaN | \n", + "0.00000 | \n", + "False | \n", + "2022-08-07 19:35:00 | \n", + "asia/jerusalem | \n", + "||||||
| 1009965 | \n", + "2022-08-07 | \n", + "Cherry tomatoes | \n", + "Cherry tomatoes | \n", + "Vegetables | \n", + "170.0 | \n", + "24.004 | \n", + "3.995 | \n", + "0.000 | \n", + "2.0060 | \n", + "0.00 | \n", + "0.0 | \n", + "2.00005 | \n", + "False | \n", + "2022-08-07 19:35:00 | \n", + "asia/jerusalem | \n", + "||||||
| 1012679 | \n", + "2022-08-07 | \n", + "Balsamic vinegar | \n", + "Balsamic vinegar | \n", + "Soups and sauces | \n", + "5.0 | \n", + "6.344 | \n", + "1.571 | \n", + "0.005 | \n", + "0.0245 | \n", + "1.15 | \n", + "NaN | \n", + "0.00000 | \n", + "False | \n", + "2022-08-07 19:35:00 | \n", + "asia/jerusalem | \n", + "||||||
| 1012976 | \n", + "2022-08-07 | \n", + "Olive oil | \n", + "Olive oil | \n", + "Oils and fats | \n", + "13.0 | \n", + "114.920 | \n", + "0.000 | \n", + "13.000 | \n", + "0.0000 | \n", + "0.26 | \n", + "0.0 | \n", + "0.00000 | \n", + "False | \n", + "2022-08-07 19:35:00 | \n", + "asia/jerusalem | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | collection_date | \n", + "short_food_name | \n", + "product_name | \n", + "food_category | \n", + "weight_g | \n", + "calories_kcal | \n", + "carbohydrate_g | \n", + "lipid_g | \n", + "protein_g | \n", + "sodium_mg | \n", + "alcohol_g | \n", + "dietary_fiber_g | \n", + "eaten_in_restaurant | \n", + "local_timestamp | \n", + "timezone | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "collection_timestamp | \n", + "food_id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5309837561 | \n", + "10k | \n", + "undefined | \n", + "NaN | \n", + "2020-06-21 16:06:00+03:00 | \n", + "1006969 | \n", + "2020-06-21 | \n", + "Quinoa | \n", + "Cooked quinoa | \n", + "Pasta, Grains and Side dishes_wholewheat | \n", + "56.0 | \n", + "78.3104 | \n", + "12.1744 | \n", + "1.2992 | \n", + "2.8000 | \n", + "37.1504 | \n", + "0.0 | \n", + "1.4896 | \n", + "False | \n", + "2020-06-21 16:06:00 | \n", + "asia/jerusalem | \n", + "
| 1008530 | \n", + "2020-06-21 | \n", + "Hummus Salad | \n", + "Rich hummus in tahini with the addition of gre... | \n", + "Pulses and products | \n", + "80.0 | \n", + "215.2000 | \n", + "9.4400 | \n", + "16.8000 | \n", + "6.5600 | \n", + "377.6000 | \n", + "NaN | \n", + "0.0000 | \n", + "False | \n", + "2020-06-21 16:06:00 | \n", + "asia/jerusalem | \n", + "|||||
| 1011068 | \n", + "2020-06-21 | \n", + "Meatballs | \n", + "Beef meatballs baked without oil | \n", + "Beef, veal, lamb, and other meat products | \n", + "180.0 | \n", + "311.0940 | \n", + "16.1280 | \n", + "15.4440 | \n", + "24.7320 | \n", + "1164.5460 | \n", + "0.0 | \n", + "2.3904 | \n", + "False | \n", + "2020-06-21 16:06:00 | \n", + "asia/jerusalem | \n", + "|||||
| 2020-06-21 19:28:00+03:00 | \n", + "1012524 | \n", + "2020-06-21 | \n", + "Banana | \n", + "Banana | \n", + "Fruits | \n", + "128.0 | \n", + "113.9200 | \n", + "25.9072 | \n", + "0.4224 | \n", + "1.3952 | \n", + "1.2800 | \n", + "0.0 | \n", + "3.3280 | \n", + "False | \n", + "2020-06-21 19:28:00 | \n", + "asia/jerusalem | \n", + "||||
| 2020-06-21 21:07:00+03:00 | \n", + "1007483 | \n", + "2020-06-21 | \n", + "Bread | \n", + "Italian bread | \n", + "Bread | \n", + "60.0 | \n", + "162.6000 | \n", + "28.3800 | \n", + "2.1000 | \n", + "5.2800 | \n", + "367.8000 | \n", + "0.0 | \n", + "1.6200 | \n", + "False | \n", + "2020-06-21 21:07:00 | \n", + "asia/jerusalem | \n", + "
| \n", + " | field_string | \n", + "description_string | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "bulk_file_extension | \n", + "relative_location | \n", + "units | \n", + "bulk_dictionary | \n", + "sampling_rate | \n", + "transformation | \n", + "list_of_tags | \n", + "stability | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_date | \n", + "Collection date (YYYY-MM-DD) | \n", + "Collection date (YYYY-MM-DD) | \n", + "6 | \n", + "hand_grip | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns] | \n", + "NaN | \n", + "hand_grip/hand_grip.parquet | \n", + "Time | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2018-10-18 | \n", + "NaN | \n", + "
| collection_timestamp | \n", + "Collection timestamp | \n", + "Collection timestamp | \n", + "6 | \n", + "hand_grip | \n", + "Datetime | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "hand_grip/hand_grip.parquet | \n", + "Time | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2018-10-18 | \n", + "2019-11-13 | \n", + "
| finger_grip_strength_left | \n", + "Finger grip strength (left) | \n", + "Finger grip strength (left) | \n", + "6 | \n", + "hand_grip | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "float | \n", + "NaN | \n", + "hand_grip/hand_grip.parquet | \n", + "kg | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Complete | \n", + "Both sexes | \n", + "2018-10-18 | \n", + "2019-11-13 | \n", + "
| finger_grip_strength_right | \n", + "Finger grip strength (right) | \n", + "Finger grip strength (right) | \n", + "6 | \n", + "hand_grip | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "float | \n", + "NaN | \n", + "hand_grip/hand_grip.parquet | \n", + "kg | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Complete | \n", + "Both sexes | \n", + "2018-10-18 | \n", + "NaN | \n", + "
| dominant_hand | \n", + "Dominant hand | \n", + "Hand preference for fine motor tasks | \n", + "6 | \n", + "hand_grip | \n", + "Categorical (single) | \n", + "Primary | \n", + "007_01 | \n", + "Single | \n", + "category | \n", + "NaN | \n", + "hand_grip/hand_grip.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2018-10-18 | \n", + "NaN | \n", + "
| hand_grip_strength_left | \n", + "Hand grip strength (left) | \n", + "Hand grip strength (left) | \n", + "6 | \n", + "hand_grip | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "float | \n", + "NaN | \n", + "hand_grip/hand_grip.parquet | \n", + "kg | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2018-10-18 | \n", + "NaN | \n", + "
| hand_grip_strength_right | \n", + "Hand grip strength (right) | \n", + "Hand grip strength (right) | \n", + "6 | \n", + "hand_grip | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "float | \n", + "NaN | \n", + "hand_grip/hand_grip.parquet | \n", + "kg | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2018-10-18 | \n", + "NaN | \n", + "
| timezone | \n", + "Timezone | \n", + "Timezone | \n", + "6 | \n", + "hand_grip | \n", + "Categorical (single) | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "string | \n", + "NaN | \n", + "hand_grip/hand_grip.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "2018-10-18 | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | collection_date | \n", + "collection_timestamp | \n", + "finger_grip_strength_left | \n", + "finger_grip_strength_right | \n", + "dominant_hand | \n", + "hand_grip_strength_left | \n", + "hand_grip_strength_right | \n", + "timezone | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2019-06-23 14:05:17.426424064 | \n", + "2019-06-19 12:30:18.852504064 | \n", + "NaN | \n", + "NaN | \n", + "Left | \n", + "21.700556 | \n", + "26.753582 | \n", + "asia/jerusalem | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2019-09-28 21:41:00.534420736 | \n", + "2019-09-25 22:16:52.070760960 | \n", + "NaN | \n", + "NaN | \n", + "Right | \n", + "52.124345 | \n", + "49.522214 | \n", + "asia/jerusalem | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2019-05-17 03:20:43.340584960 | \n", + "2019-04-30 02:09:12.334315776 | \n", + "NaN | \n", + "NaN | \n", + "Right | \n", + "51.476022 | \n", + "57.177981 | \n", + "asia/jerusalem | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2019-08-21 13:51:11.617896704 | \n", + "2019-08-16 05:12:55.808557824 | \n", + "NaN | \n", + "NaN | \n", + "Right | \n", + "26.769750 | \n", + "29.277105 | \n", + "asia/jerusalem | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2019-11-13 00:00:00.000000000 | \n", + "2019-11-13 13:12:06.036445952 | \n", + "NaN | \n", + "NaN | \n", + "Right | \n", + "30.126313 | \n", + "30.635810 | \n", + "asia/jerusalem | \n", + "
| \n", + " | field_string | \n", + "description_string | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "bulk_file_extension | \n", + "relative_location | \n", + "units | \n", + "bulk_dictionary | \n", + "sampling_rate | \n", + "transformation | \n", + "list_of_tags | \n", + "stability | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_date | \n", + "Collection date (YYYY-MM-DD) | \n", + "Collection date (YYYY-MM-DD) | \n", + "7 | \n", + "blood_pressure | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns] | \n", + "NaN | \n", + "blood_pressure/blood_pressure.parquet | \n", + "Time | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Blood pressure, Physical measures | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-29 | \n", + "NaN | \n", + "
| collection_timestamp | \n", + "Collection timestamp | \n", + "Collection timestamp | \n", + "7 | \n", + "blood_pressure | \n", + "Datetime | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "blood_pressure/blood_pressure.parquet | \n", + "Time | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Blood pressure, Physical measures | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-29 | \n", + "NaN | \n", + "
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| lying_blood_pressure_diastolic | \n", + "Lying diastolic blood pressure | \n", + "Lying diastolic blood pressure value | \n", + "7 | \n", + "blood_pressure | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "float | \n", + "NaN | \n", + "blood_pressure/blood_pressure.parquet | \n", + "mmHg | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Blood pressure, Physical measures | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-29 | \n", + "NaN | \n", + "
| lying_blood_pressure_pulse_rate | \n", + "Lying blood pressure pulse rate | \n", + "Lying blood pressure pulse rate | \n", + "7 | \n", + "blood_pressure | \n", + "Continuous | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "float | \n", + "NaN | \n", + "blood_pressure/blood_pressure.parquet | \n", + "bpm | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Blood pressure, Physical measures | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-01-29 | \n", + "NaN | \n", + "
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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603 rows × 192 columns
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|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
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|---|---|---|---|---|---|---|---|---|
| 22:6_cholesteryl_ester | \n", + "463.0 | \n", + "1.081148 | \n", + "0.458901 | \n", + "0.0449 | \n", + "0.761431 | \n", + "1.208086 | \n", + "1.512437 | \n", + "1.512437 | \n", + "
| \n", + " | field_string | \n", + "description_string | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "units | \n", + "... | \n", + "stability | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "transformation | \n", + "list_of_tags | \n", + "min_plausible_value | \n", + "max_plausible_value | \n", + "dependency | \n", + "parent_dataframe | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| collection_date | \n", + "Collection date | \n", + "Collection date | \n", + "9.0 | \n", + "sleep,sleep_raw | \n", + "Date | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "datetime64[ns] | \n", + "Date | \n", + "... | \n", + "Accruing | \n", + "Both sexes | \n", + "2020-01-15 | \n", + "NaN | \n", + "NaN | \n", + "Sleep Monitoring | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| night | \n", + "Night | \n", + "Night | \n", + "9.0 | \n", + "sleep,sleep_raw | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "int | \n", + "NaN | \n", + "... | \n", + "Accruing | \n", + "Both sexes | \n", + "2020-01-15 | \n", + "NaN | \n", + "NaN | \n", + "Sleep Monitoring | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| warnings | \n", + "Warnings | \n", + "Analysis warnings | \n", + "9.0 | \n", + "sleep,sleep_raw | \n", + "Categorical (multiple) | \n", + "Primary | \n", + "009_04 | \n", + "Multiple | \n", + "object | \n", + "Text | \n", + "... | \n", + "Accruing | \n", + "Both sexes | \n", + "2020-01-15 | \n", + "NaN | \n", + "NaN | \n", + "Sleep Monitoring | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "Timezone | \n", + "Timezone | \n", + "9.0 | \n", + "sleep,sleep_raw | \n", + "Categorical (single) | \n", + "Auxiliary | \n", + "001_03 | \n", + "Multiple | \n", + "category_ordered | \n", + "Text | \n", + "... | \n", + "Accruing | \n", + "Both sexes | \n", + "2020-01-15 | \n", + "NaN | \n", + "NaN | \n", + "Sleep Monitoring | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| REM | \n", + "REM | \n", + "REM | \n", + "9.0 | \n", + "events_time_series | \n", + "rows: event | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "string | \n", + "Text | \n", + "... | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Sleep Monitoring | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "events_time_series | \n", + "
| REM Period | \n", + "REM Period | \n", + "REM Period | \n", + "9.0 | \n", + "events_time_series | \n", + "rows: event | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "string | \n", + "Text | \n", + "... | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Sleep Monitoring | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "events_time_series | \n", + "
| Resp. Event | \n", + "Resp. Event | \n", + "Resp. Event | \n", + "9.0 | \n", + "events_time_series | \n", + "rows: event | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "string | \n", + "Text | \n", + "... | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Sleep Monitoring | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "events_time_series | \n", + "
| Sleep | \n", + "Sleep | \n", + "Sleep | \n", + "9.0 | \n", + "events_time_series | \n", + "rows: event | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "string | \n", + "Text | \n", + "... | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Sleep Monitoring | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "events_time_series | \n", + "
| Wake | \n", + "Wak | \n", + "Wak | \n", + "9.0 | \n", + "events_time_series | \n", + "rows: event | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "string | \n", + "Text | \n", + "... | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Sleep Monitoring | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "events_time_series | \n", + "
541 rows × 24 columns
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|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "source | \n", + "collection_timestamp | \n", + "\n", + " |
| 5309837561 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "actigraph | \n", + "2020-06-22 00:38:58+03:00 | \n", + "1437.0 | \n", + "
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| 2020-06-22 00:38:58.020000+03:00 | \n", + "1507.0 | \n", + "|||||
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| spo2 | \n", + "2020-06-22 03:46:59+03:00 | \n", + "98.0 | \n", + "||||
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3103650 rows × 1 columns
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|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "collection_timestamp | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5309837561 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-06-22 00:38:58+03:00 | \n", + "2020-06-22 00:39:04+03:00 | \n", + "Excluded | \n", + "heart_rate_raw | \n", + "0 | \n", + "6 | \n", + "
| 2020-06-22 00:38:58+03:00 | \n", + "2020-06-22 00:39:03+03:00 | \n", + "Excluded | \n", + "spo2 | \n", + "0 | \n", + "5 | \n", + "||||
| 2020-06-22 00:38:58+03:00 | \n", + "2020-06-22 00:43:58+03:00 | \n", + "Wake | \n", + "actigraph | \n", + "0 | \n", + "300 | \n", + "||||
| 2020-06-22 00:38:58+03:00 | \n", + "2020-06-22 00:39:03+03:00 | \n", + "Invalid Time | \n", + "general | \n", + "0 | \n", + "5 | \n", + "||||
| 2020-06-22 00:38:58+03:00 | \n", + "2020-06-22 00:39:02+03:00 | \n", + "Artifact | \n", + "pat_infra | \n", + "0 | \n", + "4 | \n", + "||||
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "||||
| 2020-06-22 03:46:38+03:00 | \n", + "2020-06-22 03:46:51+03:00 | \n", + "Pat Amplitude Change | \n", + "pat_amplitude | \n", + "11260 | \n", + "11273 | \n", + "||||
| 2020-06-22 03:46:59+03:00 | \n", + "2020-06-22 03:47:03+03:00 | \n", + "Invalid Time | \n", + "general | \n", + "11281 | \n", + "11285 | \n", + "||||
| 2020-06-22 03:47:00+03:00 | \n", + "2020-06-22 03:47:03+03:00 | \n", + "Excluded | \n", + "spo2 | \n", + "11282 | \n", + "11285 | \n", + "||||
| 2020-06-22 03:47:04+03:00 | \n", + "2020-06-22 03:47:04+03:00 | \n", + "Fine Trunc | \n", + "pat_infra | \n", + "11286 | \n", + "11286 | \n", + "||||
| 2020-06-22 10:42:58+03:00 | \n", + "2020-06-22 10:42:58+03:00 | \n", + "Gross Trunc | \n", + "pat_infra | \n", + "36240 | \n", + "36240 | \n", + "
360 rows × 5 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | hrv_frequency_hf_during_night | \n", + "hrv_frequency_hf_during_nrem | \n", + "hrv_frequency_hf_during_rem | \n", + "hrv_frequency_hf_during_wake | \n", + "hrv_frequency_hfn_during_night | \n", + "hrv_frequency_hfn_during_nrem | \n", + "hrv_frequency_hfn_during_rem | \n", + "hrv_frequency_hfn_during_wake | \n", + "hrv_frequency_lf_during_night | \n", + "hrv_frequency_lf_during_nrem | \n", + "... | \n", + "hrv_frequency_ulf_during_rem | \n", + "hrv_frequency_ulf_during_wake | \n", + "hrv_frequency_vhf_during_night | \n", + "hrv_frequency_vhf_during_nrem | \n", + "hrv_frequency_vhf_during_rem | \n", + "hrv_frequency_vhf_during_wake | \n", + "hrv_frequency_vlf_during_night | \n", + "hrv_frequency_vlf_during_nrem | \n", + "hrv_frequency_vlf_during_rem | \n", + "hrv_frequency_vlf_during_wake | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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765 rows × 7 columns
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765 rows × 13 columns
\n", + "| \n", + " | ahi | \n", + "age | \n", + "sex | \n", + "collection_date | \n", + "
|---|---|---|---|---|
| participant_id | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 1008549674 | \n", + "1.981798 | \n", + "54.076323 | \n", + "Male | \n", + "2021-05-03 10:59:10.678266624 | \n", + "
| 1013278430 | \n", + "2.492182 | \n", + "52.951624 | \n", + "Female | \n", + "2022-01-29 23:47:49.686752512 | \n", + "
| 1023812991 | \n", + "1.671479 | \n", + "46.108067 | \n", + "Female | \n", + "2021-08-22 06:00:46.381267712 | \n", + "
| 1058766183 | \n", + "1.677957 | \n", + "55.977894 | \n", + "Female | \n", + "2022-08-05 18:01:55.212064000 | \n", + "
| 1063850013 | \n", + "2.504606 | \n", + "44.156043 | \n", + "Male | \n", + "2021-08-28 18:51:22.577827328 | \n", + "
| \n", + " | count | \n", + "mean | \n", + "std | \n", + "min | \n", + "25% | \n", + "50% | \n", + "75% | \n", + "max | \n", + "
|---|---|---|---|---|---|---|---|---|
| ahi | \n", + "543.0 | \n", + "2.192267 | \n", + "0.770206 | \n", + "0.524729 | \n", + "1.795814 | \n", + "2.25625 | \n", + "2.673386 | \n", + "3.898735 | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "field_type | \n", + "data_coding | \n", + "bulk_file_extension | \n", + "description_string | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "array | \n", + "list_of_tags | \n", + "debut | \n", + "transformation | \n", + "pandas_dtype | \n", + "completed | \n", + "bulk_dictionary | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_date | \n", + "11 | \n", + "body_composition | \n", + "Collection date (YYYY-MM-DD) | \n", + "body_composition/body_composition.parquet | \n", + "Date | \n", + "NaN | \n", + "NaN | \n", + "Collection date (YYYY-MM-DD) | \n", + "NaN | \n", + "Time | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "11 | \n", + "body_composition | \n", + "Timezone | \n", + "body_composition/body_composition.parquet | \n", + "Categorical (single) | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "string | \n", + "NaN | \n", + "NaN | \n", + "
| collection_timestamp | \n", + "11 | \n", + "body_composition | \n", + "Collection timestamp | \n", + "body_composition/body_composition.parquet | \n", + "Date | \n", + "NaN | \n", + "NaN | \n", + "Collection timestamp | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "NaN | \n", + "
| body_comp_android_bone_mass | \n", + "11 | \n", + "body_composition | \n", + "Body composition android bone mass | \n", + "body_composition/body_composition.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "Body composition android bone mass | \n", + "Accruing | \n", + "gram | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "NaN | \n", + "
| body_comp_android_fat_free_mass | \n", + "11 | \n", + "body_composition | \n", + "Body composition android fat free mass | \n", + "body_composition/body_composition.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "Body composition android fat free mass | \n", + "Accruing | \n", + "gram | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "NaN | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| total_scan_sat_mass | \n", + "11 | \n", + "body_composition | \n", + "Total scan subcutaneous adipose tissue mass | \n", + "body_composition/body_composition.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "Total scan subcutaneous adipose tissue (SAT) mass | \n", + "Accruing | \n", + "gram | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "NaN | \n", + "
| total_scan_sat_volume | \n", + "11 | \n", + "body_composition | \n", + "Total scan subcutaneous adipose tissue volume | \n", + "body_composition/body_composition.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "Total scan subcutaneous adipose tissue (SAT) v... | \n", + "Accruing | \n", + "cm^3 | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "NaN | \n", + "
| total_scan_vat_area | \n", + "11 | \n", + "body_composition | \n", + "Total scan visceral adipose tissue area | \n", + "body_composition/body_composition.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "Total scan visceral adipose tissue (VAT) area | \n", + "Accruing | \n", + "cm^2 | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "NaN | \n", + "
| total_scan_vat_mass | \n", + "11 | \n", + "body_composition | \n", + "Total scan visceral adipose tissue mass | \n", + "body_composition/body_composition.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "Total scan visceral adipose tissue (VAT) mass | \n", + "Accruing | \n", + "gram | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "NaN | \n", + "
| total_scan_vat_volume | \n", + "11 | \n", + "body_composition | \n", + "Total scan visceral adipose tissue volume | \n", + "body_composition/body_composition.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "Total scan visceral adipose tissue (VAT) volume | \n", + "Accruing | \n", + "cm^3 | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "NaN | \n", + "
155 rows × 20 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | body_comp_android_bone_mass | \n", + "body_comp_android_fat_free_mass | \n", + "body_comp_android_fat_mass | \n", + "body_comp_android_lean_mass | \n", + "body_comp_android_region_percent_fat | \n", + "body_comp_android_tissue_mass | \n", + "body_comp_android_tissue_percent_fat | \n", + "body_comp_android_total_mass | \n", + "body_comp_arm_left_bone_mass | \n", + "body_comp_arm_left_fat_free_mass | \n", + "... | \n", + "timezone | \n", + "total_scan_dose | \n", + "total_scan_sat_area | \n", + "total_scan_sat_mass | \n", + "total_scan_sat_volume | \n", + "total_scan_vat_area | \n", + "total_scan_vat_mass | \n", + "total_scan_vat_volume | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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603 rows × 157 columns
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603 rows × 11 columns
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| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " |
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "13.0 | \n", + "gut_microbiome | \n", + "Sampled timestamp | \n", + "Time sample was given | \n", + "NaN | \n", + "gut_microbiome/gut_microbiome.parquet | \n", + "NaN | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Gut Microbiome | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "
| collection_date | \n", + "13.0 | \n", + "gut_microbiome | \n", + "Sampled date | \n", + "Date sample was given | \n", + "NaN | \n", + "gut_microbiome/gut_microbiome.parquet | \n", + "NaN | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Gut Microbiome | \n", + "datetime64[ns] | \n", + "NaN | \n", + "
| timezone | \n", + "13.0 | \n", + "gut_microbiome | \n", + "Timezone | \n", + "Timezone | \n", + "NaN | \n", + "gut_microbiome/gut_microbiome.parquet | \n", + "NaN | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Gut Microbiome | \n", + "category | \n", + "NaN | \n", + "
| sample_name | \n", + "13.0 | \n", + "gut_microbiome | \n", + "Sample name | \n", + "Sample Name | \n", + "NaN | \n", + "gut_microbiome/gut_microbiome.parquet | \n", + "NaN | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Gut Microbiome | \n", + "string | \n", + "NaN | \n", + "
| urs_metadata_parquet | \n", + "13.0 | \n", + "urs_abundances_aggregated | \n", + "URS abundances metadata | \n", + "Organism classification and taxonomy | \n", + "NaN | \n", + "gut_microbiome/gut_microbiome.parquet | \n", + "NaN | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "parquet | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Gut Microbiome | \n", + "category | \n", + "NaN | \n", + "
5 rows × 21 columns
\n", + "| \n", + " | k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Rikenellaceae|g__Alistipes|s__Alistipes_putredinis|t__SGB2318 | \n", + "
|---|---|
| count | \n", + "587.000000 | \n", + "
| mean | \n", + "2.191104 | \n", + "
| std | \n", + "1.889571 | \n", + "
| min | \n", + "0.003716 | \n", + "
| 25% | \n", + "0.688188 | \n", + "
| 50% | \n", + "1.608841 | \n", + "
| 75% | \n", + "3.039973 | \n", + "
| max | \n", + "10.867894 | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Catabacteriaceae | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Christensenellaceae | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiaceae | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiales_Family_XIII_Incertae_Sedis | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Clostridiales_unclassified | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Eubacteriaceae | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Hungateiclostridiaceae | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Lachnospiraceae | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Oscillospiraceae | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Peptococcaceae | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Peptostreptococcaceae | \n", + "k__Bacteria|p__Firmicutes|c__Clostridia|o__Clostridiales|f__Ruminococcaceae | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 1008549674 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0.054261 | \n", + "4.711128 | \n", + "0.000005 | \n", + "0.180643 | \n", + "0.430344 | \n", + "NaN | \n", + "8.541591 | \n", + "0.835799 | \n", + "0.070703 | \n", + "NaN | \n", + "16.631813 | \n", + "
| 1067433273 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0.000006 | \n", + "NaN | \n", + "6.898373 | \n", + "NaN | \n", + "0.329218 | \n", + "0.049834 | \n", + "NaN | \n", + "11.310723 | \n", + "0.175008 | \n", + "0.000425 | \n", + "0.053724 | \n", + "11.284473 | \n", + "
| 02_00_visit | \n", + "0 | \n", + "0.000035 | \n", + "0.001386 | \n", + "2.138306 | \n", + "0.001308 | \n", + "0.237505 | \n", + "0.422772 | \n", + "NaN | \n", + "5.204286 | \n", + "0.157168 | \n", + "0.000283 | \n", + "NaN | \n", + "15.775302 | \n", + "||
| 1077141271 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0.000780 | \n", + "1.298681 | \n", + "0.000111 | \n", + "0.147299 | \n", + "0.149547 | \n", + "NaN | \n", + "6.890310 | \n", + "0.157884 | \n", + "NaN | \n", + "NaN | \n", + "19.127505 | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0.001495 | \n", + "1.269370 | \n", + "NaN | \n", + "0.179476 | \n", + "0.183193 | \n", + "NaN | \n", + "12.678288 | \n", + "0.530855 | \n", + "0.013750 | \n", + "0.000446 | \n", + "17.848225 | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 9966614749 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0.000111 | \n", + "0.050595 | \n", + "1.874999 | \n", + "0.000213 | \n", + "0.115039 | \n", + "0.159193 | \n", + "NaN | \n", + "8.497083 | \n", + "0.275788 | \n", + "0.000415 | \n", + "0.000658 | \n", + "7.690182 | \n", + "
| 9980806506 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "1.170213 | \n", + "NaN | \n", + "0.114622 | \n", + "0.108437 | \n", + "NaN | \n", + "4.695665 | \n", + "0.648947 | \n", + "NaN | \n", + "0.013355 | \n", + "22.686704 | \n", + "
| 9991756294 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0.016355 | \n", + "2.942311 | \n", + "0.000732 | \n", + "0.774345 | \n", + "0.440856 | \n", + "NaN | \n", + "8.672799 | \n", + "0.557213 | \n", + "0.037798 | \n", + "NaN | \n", + "32.468906 | \n", + "
| 9992994539 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0.000801 | \n", + "6.552048 | \n", + "0.000185 | \n", + "0.053417 | \n", + "0.048132 | \n", + "NaN | \n", + "8.615400 | \n", + "0.034929 | \n", + "0.000576 | \n", + "0.001088 | \n", + "9.804472 | \n", + "
| 02_00_visit | \n", + "0 | \n", + "NaN | \n", + "0.011517 | \n", + "0.923829 | \n", + "0.000146 | \n", + "0.097876 | \n", + "0.199686 | \n", + "NaN | \n", + "3.709199 | \n", + "1.034554 | \n", + "0.000070 | \n", + "0.000518 | \n", + "6.553307 | \n", + "
600 rows × 12 columns
\n", + "| \n", + " | field_string | \n", + "description_string | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "bulk_file_extension | \n", + "... | \n", + "stability | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "min_plausible_value | \n", + "max_plausible_value | \n", + "dependency | \n", + "customer_field | \n", + "parent_dataframe | \n", + "Unnamed: 0 | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_date | \n", + "Collection date (YYYY-MM-DD) | \n", + "Collection date (YYYY-MM-DD) | \n", + "15.0 | \n", + "ecg | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns] | \n", + "NaN | \n", + "... | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-08-13 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "Timezone | \n", + "Timezone for timestamp columns | \n", + "15.0 | \n", + "ecg | \n", + "Text | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "string | \n", + "NaN | \n", + "... | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-08-13 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| collection_timestamp | \n", + "Collection timestamp | \n", + "Collection timestamp | \n", + "15.0 | \n", + "ecg | \n", + "Datetime | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "... | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-08-13 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| raw_ecg_time_series | \n", + "Raw ECG times series file path | \n", + "S3 reference to raw ECG time series | \n", + "15.0 | \n", + "raw_timeseries_long | \n", + "Bulk file (individual) | \n", + "Auxiliary | \n", + "NaN | \n", + "Single | \n", + "string | \n", + "parquet | \n", + "... | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-08-13 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| processed_ecg_time_series | \n", + "Processed ECG times series file path | \n", + "S3 reference to processed ECG time series | \n", + "15.0 | \n", + "processed_timeseries_long | \n", + "Bulk file (individual) | \n", + "Auxiliary | \n", + "NaN | \n", + "Single | \n", + "string | \n", + "parquet | \n", + "... | \n", + "Accruing | \n", + "Both sexes | \n", + "2019-08-13 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
5 rows × 26 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | collection_date | \n", + "timezone | \n", + "raw_ecg_time_series | \n", + "processed_ecg_time_series | \n", + "raw_ecg_time_series_wide | \n", + "processed_ecg_time_series_wide | \n", + "hr_bpm | \n", + "p_ms | \n", + "pr_ms | \n", + "qrs_ms | \n", + "... | \n", + "t_mv_III | \n", + "t_mv_V1 | \n", + "t_mv_V2 | \n", + "t_mv_V3 | \n", + "t_mv_V4 | \n", + "t_mv_V5 | \n", + "t_mv_V6 | \n", + "non_confirmed_diagnosis | \n", + "qrs | \n", + "st_t | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2019-12-28 | \n", + "asia/jerusalem | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "75.643396 | \n", + "98.796804 | \n", + "149.207492 | \n", + "80.370043 | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "-3.938265 | \n", + "1.063769 | \n", + "1.601919 | \n", + "-1.634136 | \n", + "-2.449547 | \n", + "sinus bradycardia first degree AV block (limited) | \n", + "anterolateral infarct\\r\\r R < 0.15 mV in V3 ... | \n", + "normal | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2022-03-05 | \n", + "asia/jerusalem | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "81.198703 | \n", + "110.089571 | \n", + "165.401339 | \n", + "74.480490 | \n", + "... | \n", + "0.64 | \n", + "0.660000 | \n", + "-3.104172 | \n", + "0.314426 | \n", + "0.137478 | \n", + "0.229987 | \n", + "-3.724118 | \n", + "sinus bradycardia premature ventricular comple... | \n", + "normal | \n", + "normal | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-12-30 | \n", + "asia/jerusalem | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "66.884172 | \n", + "135.717458 | \n", + "157.628969 | \n", + "112.282826 | \n", + "... | \n", + "0.64 | \n", + "-2.173566 | \n", + "-4.311605 | \n", + "1.710000 | \n", + "0.848027 | \n", + "-0.605386 | \n", + "-4.216907 | \n", + "sinus bradycardia first degree AV block | \n", + "normal | \n", + "normal | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2021-08-09 | \n", + "asia/jerusalem | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "52.824653 | \n", + "118.399289 | \n", + "108.174493 | \n", + "95.430899 | \n", + "... | \n", + "0.64 | \n", + "-3.824544 | \n", + "-2.201717 | \n", + "0.605452 | \n", + "1.640000 | \n", + "1.281194 | \n", + "-2.158325 | \n", + "sinus arrhythmia | \n", + "normal | \n", + "normal | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-07-12 | \n", + "asia/jerusalem | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "62.484369 | \n", + "117.228797 | \n", + "151.605412 | \n", + "74.817144 | \n", + "... | \n", + "0.64 | \n", + "-1.541542 | \n", + "1.960000 | \n", + "0.172236 | \n", + "-1.425811 | \n", + "0.792824 | \n", + "-0.231174 | \n", + "Message: One or more complexes are spikes. One... | \n", + "nan | \n", + "normal | \n", + "
5 rows × 103 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | source | \n", + "MDC_ECG_LEAD_I | \n", + "MDC_ECG_LEAD_II | \n", + "MDC_ECG_LEAD_III | \n", + "MDC_ECG_LEAD_V1 | \n", + "MDC_ECG_LEAD_V2 | \n", + "MDC_ECG_LEAD_V3 | \n", + "MDC_ECG_LEAD_V4 | \n", + "MDC_ECG_LEAD_V5 | \n", + "MDC_ECG_LEAD_V6 | \n", + "MDC_ECG_LEAD_aVF | \n", + "MDC_ECG_LEAD_aVL | \n", + "MDC_ECG_LEAD_aVR | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "collection_timestamp | \n", + "time_delta | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5309837561 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-06-21 14:27:50.057700+03:00 | \n", + "0 | \n", + "-6 | \n", + "-14 | \n", + "-12 | \n", + "16 | \n", + "18 | \n", + "30 | \n", + "2 | \n", + "-24 | \n", + "-40 | \n", + "-12 | \n", + "2 | \n", + "11 | \n", + "
| 2020-06-21 14:27:50.058700+03:00 | \n", + "1 | \n", + "-6 | \n", + "-14 | \n", + "-12 | \n", + "16 | \n", + "18 | \n", + "30 | \n", + "2 | \n", + "-24 | \n", + "-40 | \n", + "-12 | \n", + "2 | \n", + "11 | \n", + "||||
| 2020-06-21 14:27:50.059700+03:00 | \n", + "2 | \n", + "-6 | \n", + "-15 | \n", + "-12 | \n", + "16 | \n", + "19 | \n", + "30 | \n", + "2 | \n", + "-24 | \n", + "-40 | \n", + "-12 | \n", + "2 | \n", + "11 | \n", + "
| \n", + " | \n", + " | \n", + " | p_ms | \n", + "age | \n", + "sex | \n", + "raw_ecg_time_series | \n", + "processed_ecg_time_series | \n", + "raw_ecg_time_series_wide | \n", + "processed_ecg_time_series_wide | \n", + "
|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "98.796804 | \n", + "54.447672 | \n", + "Female | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "
| 5027574288 | \n", + "10k | \n", + "0 | \n", + "110.089571 | \n", + "54.169913 | \n", + "Male | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "
| 7783260382 | \n", + "10k | \n", + "0 | \n", + "135.717458 | \n", + "45.892093 | \n", + "Male | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "
| 1178277844 | \n", + "10k | \n", + "0 | \n", + "118.399289 | \n", + "44.435100 | \n", + "Female | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "
| 1622660825 | \n", + "10k | \n", + "0 | \n", + "117.228797 | \n", + "44.621536 | \n", + "Male | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/raw_ec... | \n", + "s3://pheno-synthetic-data/data/ecg/bulk/proces... | \n", + "
| \n", + " | count | \n", + "mean | \n", + "std | \n", + "min | \n", + "25% | \n", + "50% | \n", + "75% | \n", + "max | \n", + "
|---|---|---|---|---|---|---|---|---|
| p_ms | \n", + "488.0 | \n", + "116.82092 | \n", + "15.591197 | \n", + "74.392255 | \n", + "106.459802 | \n", + "116.115695 | \n", + "124.781916 | \n", + "176.0 | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "description_string | \n", + "relative_location | \n", + "bulk_dictionary | \n", + "field_type | \n", + "data_coding | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "bulk_file_extension | \n", + "strata | \n", + "sexed | \n", + "array | \n", + "debut | \n", + "completed | \n", + "transformation | \n", + "list_of_tags | \n", + "pandas_dtype | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| hmo | \n", + "16 | \n", + "blood_tests | \n", + "HMO | \n", + "One of 4 Isreali HMOs | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Categorical (single) | \n", + "NaN | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "category | \n", + "
| collection_date | \n", + "16 | \n", + "blood_tests | \n", + "Collection date | \n", + "Collection date | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Date | \n", + "NaN | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Auxiliary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "datetime64[ns] | \n", + "
| bt__albumin_float_value | \n", + "16 | \n", + "blood_tests | \n", + "Blood test - Albumin (Numerical) | \n", + "Albumin | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Continuous | \n", + "NaN | \n", + "Accruing | \n", + "g/dl | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "float | \n", + "
| bt__alkaline_phosphatase_float_value | \n", + "16 | \n", + "blood_tests | \n", + "Blood test - Alkaline Phosphatase (Numerical) | \n", + "ALKP - Alkaline Phosphatase | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Continuous | \n", + "NaN | \n", + "Accruing | \n", + "u/l | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "float | \n", + "
| bt__alt_float_value | \n", + "16 | \n", + "blood_tests | \n", + "Blood test - ALT (Numerical) | \n", + "ALT (GPT) - Alanine Aminotransferease | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Continuous | \n", + "NaN | \n", + "Accruing | \n", + "u/l | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "float | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| urine__acr_categorical_value | \n", + "16 | \n", + "blood_tests | \n", + "Urine test - ACR (Categorical) | \n", + "Urine ACR - Albumin / Creatinine Ratio | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Categorical (single) | \n", + "NaN | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "category | \n", + "
| urine__acr_float_value | \n", + "16 | \n", + "blood_tests | \n", + "Urine test - ACR (Numerical) | \n", + "Urine ACR - Albumin / Creatinine Ratio | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Continuous | \n", + "NaN | \n", + "Accruing | \n", + "mg/g creatinine | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "float | \n", + "
| urine__creatinine_float_value | \n", + "16 | \n", + "blood_tests | \n", + "Urine test - Creatinine (Numerical) | \n", + "Creatinine | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Continuous | \n", + "NaN | \n", + "Accruing | \n", + "mg/dl | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "float | \n", + "
| urine__microalbumin_categorical_value | \n", + "16 | \n", + "blood_tests | \n", + "Urine test - Microalbumin (Categorical) | \n", + "Microalbumin | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Categorical (single) | \n", + "NaN | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "category | \n", + "
| urine__microalbumin_float_value | \n", + "16 | \n", + "blood_tests | \n", + "Urine test - Microalbumin (Numerical) | \n", + "Microalbumin | \n", + "blood_tests/blood_tests.parquet | \n", + "NaN | \n", + "Continuous | \n", + "NaN | \n", + "Accruing | \n", + "mg/l | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "2015-01-01 | \n", + "NaN | \n", + "NaN | \n", + "Blood Tests | \n", + "float | \n", + "
65 rows × 20 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | bt__hba1c_float_value | \n", + "age | \n", + "sex | \n", + "collection_date | \n", + "
|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "54.447672 | \n", + "Female | \n", + "2011-12-27 | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "54.169913 | \n", + "Male | \n", + "2019-01-19 | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "45.892093 | \n", + "Male | \n", + "2015-02-07 | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "44.435100 | \n", + "Female | \n", + "2019-03-12 | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "8.828911 | \n", + "44.621536 | \n", + "Male | \n", + "2018-12-23 | \n", + "
| \n", + " | count | \n", + "mean | \n", + "std | \n", + "min | \n", + "25% | \n", + "50% | \n", + "75% | \n", + "max | \n", + "
|---|---|---|---|---|---|---|---|---|
| bt__hba1c_float_value | \n", + "173.0 | \n", + "7.859596 | \n", + "2.050671 | \n", + "0.252675 | \n", + "8.420343 | \n", + "8.828911 | \n", + "8.828911 | \n", + "8.828911 | \n", + "
| \n", + " | field_string | \n", + "description_string | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "bulk_file_extension | \n", + "... | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "customer_field | \n", + "dependency | \n", + "old_data_loader | \n", + "old_lab_data_column_name | \n", + "min_plausible_value | \n", + "max_plausible_value | \n", + "parent_dataframe | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| cgm_time_series | \n", + "CGM timeseries | \n", + "File containing the participants' CGM timeseries | \n", + "17 | \n", + "timeseries | \n", + "Time series file (individual) | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "string | \n", + ".parquet | \n", + "... | \n", + "Both sexes | \n", + "2018-12-27 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| connection_id | \n", + "ConnectionID | \n", + "CGM device connection id | \n", + "17 | \n", + "cgm | \n", + "Text | \n", + "Auxiliary | \n", + "NaN | \n", + "Single | \n", + "int | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "2018-12-28 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| collection_timestamp | \n", + "Collection timestamp | \n", + "CGM connection first data point timestamp | \n", + "17 | \n", + "cgm | \n", + "Datetime | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "2018-12-29 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| cgm_connection_first_date | \n", + "CGM first date | \n", + "CGM connection first date | \n", + "17 | \n", + "cgm | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "2018-12-30 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| cgm_connection_last_date | \n", + "CGM last date | \n", + "CGM connection last date | \n", + "17 | \n", + "cgm | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "2018-12-31 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| cgm_device_type | \n", + "CGM Device type | \n", + "CGM Device type | \n", + "17 | \n", + "cgm | \n", + "Text | \n", + "Auxiliary | \n", + "017_01 | \n", + "Single | \n", + "category_ordered | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "2018-12-27 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| number_of_cgm_datapoints_lost_in_qc | \n", + "CGM datapoints lost in QC | \n", + "Number of CGM datapoints lost in QC | \n", + "17 | \n", + "cgm | \n", + "Integer | \n", + "Auxiliary | \n", + "NaN | \n", + "Single | \n", + "int | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "2018-12-28 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| percentage_of_cgm_datapoints_lost_in_qc | \n", + "Percentage of CGM datapoints lost in QC | \n", + "NaN | \n", + "17 | \n", + "cgm | \n", + "Continuous | \n", + "Auxiliary | \n", + "NaN | \n", + "Single | \n", + "float | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "2018-12-29 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| number_of_cgm_days_available_for_the_connection | \n", + "Number of CGM days available | \n", + "Number of CGM days available for the connection | \n", + "17 | \n", + "cgm | \n", + "Integer | \n", + "Auxiliary | \n", + "NaN | \n", + "Single | \n", + "int | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "2018-12-30 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| number_of_cgm_datapoints_available_for_the_connection | \n", + "Number of CGM datapoints available | \n", + "Number of CGM datapoints available for the con... | \n", + "17 | \n", + "cgm | \n", + "Integer | \n", + "Auxiliary | \n", + "NaN | \n", + "Single | \n", + "int | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "2018-12-31 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
10 rows × 27 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | cgm_time_series | \n", + "connection_id | \n", + "collection_timestamp | \n", + "cgm_device_type | \n", + "percentage_of_cgm_datapoints_lost_in_qc | \n", + "timezone | \n", + "
|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5309837561 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "s3://pheno-synthetic-data/data/cgm/timeseries/... | \n", + "2479747070 | \n", + "2022-12-30 00:14:00 | \n", + "abbott_freestyle_libre_pro_iq | \n", + "NaN | \n", + "asia/jerusalem | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "s3://pheno-synthetic-data/data/cgm/timeseries/... | \n", + "4310873274 | \n", + "NaT | \n", + "abbott_freestyle_libre_pro_iq | \n", + "NaN | \n", + "asia/jerusalem | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "s3://pheno-synthetic-data/data/cgm/timeseries/... | \n", + "5902733005 | \n", + "NaT | \n", + "abbott_freestyle_libre_pro | \n", + "NaN | \n", + "asia/jerusalem | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "s3://pheno-synthetic-data/data/cgm/timeseries/... | \n", + "7190428580 | \n", + "NaT | \n", + "abbott_freestyle_libre_pro_iq | \n", + "0.068636 | \n", + "asia/jerusalem | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "s3://pheno-synthetic-data/data/cgm/timeseries/... | \n", + "7962868917 | \n", + "NaT | \n", + "abbott_freestyle_libre_pro_iq | \n", + "NaN | \n", + "asia/jerusalem | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | cgm_1st_quartile | \n", + "cgm_3rd_quartile | \n", + "cgm_above_140 | \n", + "cgm_above_180 | \n", + "cgm_above_250 | \n", + "cgm_below_54 | \n", + "cgm_below_70 | \n", + "cgm_in_range_63_140 | \n", + "cgm_in_range_70_180 | \n", + "cgm_adrr | \n", + "... | \n", + "cgm_modd | \n", + "cgm_range | \n", + "cgm_sd | \n", + "cgm_sd_roc | \n", + "cgm_sdb | \n", + "cgm_sdbdm | \n", + "cgm_sddm | \n", + "cgm_sdhhmm | \n", + "cgm_sdw | \n", + "cgm_sdwsh | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5309837561 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "0.004056 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "18.342042 | \n", + "NaN | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "149.486317 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
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5 rows × 46 columns
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2019-08-30 01:56:49.939567872 | \n", + "1 | \n", + "74.641537 | \n", + "97.370676 | \n", + "0.000000 | \n", + "0.0 | \n", + "0.0 | \n", + "1.083988 | \n", + "16.642211 | \n", + "87.617490 | \n", + "... | \n", + "15.515826 | \n", + "40.514917 | \n", + "54.478009 | \n", + "164.459427 | \n", + "91.376919 | \n", + "93.942667 | \n", + "123.129704 | \n", + "23.178019 | \n", + "0.828309 | \n", + "7.799843 | \n", + "
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5 rows × 41 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | cgm_ea1c | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " |
| 5309837561 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "45.892093 | \n", + "Male | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "44.435100 | \n", + "Female | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "44.621536 | \n", + "Male | \n", + "
| \n", + " | count | \n", + "mean | \n", + "std | \n", + "min | \n", + "25% | \n", + "50% | \n", + "75% | \n", + "max | \n", + "
|---|---|---|---|---|---|---|---|---|
| cgm_ea1c | \n", + "45.0 | \n", + "4.87623 | \n", + "0.334223 | \n", + "4.193397 | \n", + "4.710427 | \n", + "4.867059 | \n", + "5.073236 | \n", + "5.742376 | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | glucose | \n", + "
|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "connection_id | \n", + "collection_timestamp | \n", + "\n", + " |
| 5309837561 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "3419931422 | \n", + "2020-06-22 00:14:00+03:00 | \n", + "106.2 | \n", + "
| 2020-06-22 00:29:00+03:00 | \n", + "100.8 | \n", + "|||||
| 2020-06-22 00:44:00+03:00 | \n", + "97.2 | \n", + "|||||
| 2020-06-22 00:59:00+03:00 | \n", + "95.4 | \n", + "|||||
| 2020-06-22 01:14:00+03:00 | \n", + "93.6 | \n", + "|||||
| ... | \n", + "... | \n", + "|||||
| 2020-07-04 22:59:00+03:00 | \n", + "102.6 | \n", + "|||||
| 2020-07-04 23:14:00+03:00 | \n", + "97.2 | \n", + "|||||
| 2020-07-04 23:29:00+03:00 | \n", + "90.0 | \n", + "|||||
| 2020-07-04 23:44:00+03:00 | \n", + "91.8 | \n", + "|||||
| 2020-07-04 23:59:00+03:00 | \n", + "97.2 | \n", + "
1248 rows × 1 columns
\n", + "| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "description_string | \n", + "bulk_dictionary | \n", + "data_coding | \n", + "stability | \n", + "field_type | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "array | \n", + "list_of_tags | \n", + "debut | \n", + "transformation | \n", + "pandas_dtype | \n", + "completed | \n", + "bulk_file_extension | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "18 | \n", + "medications | \n", + "Collection time | \n", + "medications/medications.parquet | \n", + "Collection time | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Datetime | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "NaN | \n", + "
| collection_date | \n", + "18 | \n", + "medications | \n", + "Collection date | \n", + "medications/medications.parquet | \n", + "Collection date | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Date | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "18 | \n", + "medications | \n", + "Timezone | \n", + "medications/medications.parquet | \n", + "Timezone | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (single) | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "category | \n", + "NaN | \n", + "NaN | \n", + "
| medication | \n", + "18 | \n", + "medications | \n", + "Medication name | \n", + "medications/medications.parquet | \n", + "Medication name | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (single) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "category | \n", + "NaN | \n", + "NaN | \n", + "
| api | \n", + "18 | \n", + "medications | \n", + "Active Pharmaceutical Ingredient | \n", + "medications/medications.parquet | \n", + "Active Pharmaceutical Ingredient | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (multiple) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Multiple | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "object | \n", + "NaN | \n", + "NaN | \n", + "
| atc3 | \n", + "18 | \n", + "medications | \n", + "List of atc codes level 3 | \n", + "medications/medications.parquet | \n", + "List of atc codes level 3 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (multiple) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Multiple | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "object | \n", + "NaN | \n", + "NaN | \n", + "
| atc4 | \n", + "18 | \n", + "medications | \n", + "List of atc codes level 4 | \n", + "medications/medications.parquet | \n", + "List of atc codes level 4 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (multiple) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Multiple | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "object | \n", + "NaN | \n", + "NaN | \n", + "
| atc5 | \n", + "18 | \n", + "medications | \n", + "List of atc codes level 5 | \n", + "medications/medications.parquet | \n", + "List of atc codes level 5 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (multiple) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Multiple | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "object | \n", + "NaN | \n", + "NaN | \n", + "
| start_month | \n", + "18 | \n", + "medications | \n", + "Start month | \n", + "medications/medications.parquet | \n", + "Start month of medication taking | \n", + "NaN | \n", + "042_03 | \n", + "NaN | \n", + "Categorical (single) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Int64 | \n", + "NaN | \n", + "NaN | \n", + "
| start_year | \n", + "18 | \n", + "medications | \n", + "Start year | \n", + "medications/medications.parquet | \n", + "Start year of medication taking | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Integer | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Int64 | \n", + "NaN | \n", + "NaN | \n", + "
| start_date | \n", + "18 | \n", + "medications | \n", + "Start date combined month + year | \n", + "medications/medications.parquet | \n", + "Start date combined month + year | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Date | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "NaN | \n", + "
| supplements | \n", + "18 | \n", + "medications | \n", + "Is supplements | \n", + "medications/medications.parquet | \n", + "Is it supplements | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (single) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "bool | \n", + "NaN | \n", + "NaN | \n", + "
| source | \n", + "18 | \n", + "medications | \n", + "Data Source | \n", + "medications/medications.parquet | \n", + "data source | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (single) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "category | \n", + "NaN | \n", + "NaN | \n", + "
| medication_mapping | \n", + "18 | \n", + "medications_auxiliary | \n", + "Medication mapping | \n", + "medications/medications.parquet | \n", + "Mapping to ATC codes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Mapping table (group) | \n", + "NaN | \n", + "NaN | \n", + "Auxiliary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "category | \n", + "NaN | \n", + "csv | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "description_string | \n", + "bulk_dictionary | \n", + "data_coding | \n", + "stability | \n", + "field_type | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "array | \n", + "list_of_tags | \n", + "debut | \n", + "transformation | \n", + "pandas_dtype | \n", + "completed | \n", + "bulk_file_extension | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| api | \n", + "18 | \n", + "medications | \n", + "Active Pharmaceutical Ingredient | \n", + "medications/medications.parquet | \n", + "Active Pharmaceutical Ingredient | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (multiple) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Multiple | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "object | \n", + "NaN | \n", + "NaN | \n", + "
| atc3 | \n", + "18 | \n", + "medications | \n", + "List of atc codes level 3 | \n", + "medications/medications.parquet | \n", + "List of atc codes level 3 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (multiple) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Multiple | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "object | \n", + "NaN | \n", + "NaN | \n", + "
| atc4 | \n", + "18 | \n", + "medications | \n", + "List of atc codes level 4 | \n", + "medications/medications.parquet | \n", + "List of atc codes level 4 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (multiple) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Multiple | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "object | \n", + "NaN | \n", + "NaN | \n", + "
| atc5 | \n", + "18 | \n", + "medications | \n", + "List of atc codes level 5 | \n", + "medications/medications.parquet | \n", + "List of atc codes level 5 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Categorical (multiple) | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Multiple | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "object | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | api | \n", + "atc3 | \n", + "atc4 | \n", + "atc5 | \n", + "collection_date | \n", + "collection_timestamp | \n", + "medication | \n", + "source | \n", + "start_date | \n", + "start_month | \n", + "start_year | \n", + "supplements | \n", + "timezone | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[FLUOXETINE] | \n", + "[N05] | \n", + "[N05CH] | \n", + "[N06AX11] | \n", + "2022-11-19 22:00:54.747024896 | \n", + "2023-01-01 22:55:48.349642496 | \n", + "Prolia | \n", + "app | \n", + "NaT | \n", + "NaN | \n", + "0 | \n", + "False | \n", + "asia/jerusalem | \n", + "54.447672 | \n", + "Female | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[MELATONIN] | \n", + "[A05] | \n", + "[A10BJ] | \n", + "[A10BA02, A10BD07, A10BH01] | \n", + "2020-06-03 11:32:37.429017856 | \n", + "2023-08-27 15:23:15.824340736 | \n", + "HR | \n", + "system | \n", + "NaT | \n", + "NaN | \n", + "0 | \n", + "False | \n", + "asia/jerusalem | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[] | \n", + "[] | \n", + "[] | \n", + "[] | \n", + "2023-11-02 03:22:11.262582016 | \n", + "2023-11-17 03:50:41.892133376 | \n", + "Basaglar | \n", + "follow_up | \n", + "NaT | \n", + "NaN | \n", + "0 | \n", + "True | \n", + "asia/jerusalem | \n", + "45.892093 | \n", + "Male | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[DUTASTERIDE] | \n", + "[A10] | \n", + "[A11CC] | \n", + "[A11CC05] | \n", + "2023-09-04 04:52:31.311277824 | \n", + "2023-10-11 23:11:04.204100864 | \n", + "Vitamin E | \n", + "follow_up | \n", + "NaT | \n", + "NaN | \n", + "0 | \n", + "True | \n", + "asia/jerusalem | \n", + "44.435100 | \n", + "Female | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[PREDNISONE] | \n", + "[A10] | \n", + "[C01BC] | \n", + "[A11GA01] | \n", + "2023-09-30 15:48:42.802777600 | \n", + "2023-10-03 02:23:50.764764672 | \n", + "Normiten | \n", + "follow_up | \n", + "NaT | \n", + "NaN | \n", + "0 | \n", + "True | \n", + "asia/jerusalem | \n", + "44.621536 | \n", + "Male | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | api | \n", + "atc3 | \n", + "atc4 | \n", + "atc5 | \n", + "collection_date | \n", + "collection_timestamp | \n", + "medication | \n", + "source | \n", + "start_date | \n", + "start_month | \n", + "start_year | \n", + "supplements | \n", + "timezone | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 8552910939 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[CIMICIFUGAE RHIZOMA] | \n", + "[A11] | \n", + "[C08CA] | \n", + "[C08CA13, C09AA02, C09BB02] | \n", + "2022-06-01 05:37:54.377797376 | \n", + "2022-05-26 08:27:31.073150720 | \n", + "Magnesium | \n", + "follow_up | \n", + "NaT | \n", + "NaN | \n", + "2021 | \n", + "False | \n", + "asia/jerusalem | \n", + "55.319435 | \n", + "Male | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | atc4 | \n", + "
|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "N05CH | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "A10BJ | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "A11CC | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "C01BC | \n", + "
| \n", + " | \n", + " | atc4 | \n", + "A02BC | \n", + "A05AA | \n", + "A10AB | \n", + "A10AE | \n", + "A10BA | \n", + "A10BD | \n", + "A10BH | \n", + "A10BJ | \n", + "A10BK | \n", + "A11CC | \n", + "... | \n", + "N06BA | \n", + "QA07F | \n", + "R03AC | \n", + "R03AK | \n", + "R03DC | \n", + "R03DX | \n", + "R06AX | \n", + "S01ED | \n", + "S01EE | \n", + "S01GX | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 1067433273 | \n", + "10k | \n", + "00_00_visit | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "... | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "
| 02_00_visit | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "... | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "||
| 1077141271 | \n", + "10k | \n", + "00_00_visit | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "... | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "True | \n", + "... | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "
| 1197725589 | \n", + "10k | \n", + "00_00_visit | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "... | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "False | \n", + "
5 rows × 70 columns
\n", + "| \n", + " | field_string | \n", + "description_string | \n", + "folder_id | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "pandas_dtype | \n", + "bulk_file_extension | \n", + "relative_location | \n", + "units | \n", + "bulk_dictionary | \n", + "sampling_rate | \n", + "transformation | \n", + "list_of_tags | \n", + "stability | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| medical_condition | \n", + "Medical condition name | \n", + "Medical condition name | \n", + "21 | \n", + "medical_conditions | \n", + "Text | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| icd11_code | \n", + "ICD11 code | \n", + "ICD-11 codes are the latest global system for ... | \n", + "21 | \n", + "medical_conditions | \n", + "Text | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| data_source | \n", + "Data source of medical condition | \n", + "Data source the self reporting of medical cond... | \n", + "21 | \n", + "medical_conditions | \n", + "Text | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| start_month | \n", + "Start month | \n", + "Start month | \n", + "21 | \n", + "medical_conditions | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "int | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| start_year | \n", + "Start year | \n", + "Start year | \n", + "21 | \n", + "medical_conditions | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "int | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| end_month | \n", + "End month | \n", + "Start month | \n", + "21 | \n", + "medical_conditions | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "int | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| end_year | \n", + "End year | \n", + "End year | \n", + "21 | \n", + "medical_conditions | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "int | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| medical_condition_heb | \n", + "Medical condition hebrew name | \n", + "Medical condition hebrew name | \n", + "21 | \n", + "medical_conditions | \n", + "Text | \n", + "Supporting | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| collection_timestamp | \n", + "Collection time | \n", + "Collection time | \n", + "21 | \n", + "medical_conditions | \n", + "Datetime | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| collection_date | \n", + "Collection date | \n", + "Collection date | \n", + "21 | \n", + "medical_conditions | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "datetime64[ns] | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| timezone | \n", + "Timezone | \n", + "Timezone | \n", + "21 | \n", + "medical_conditions | \n", + "Categorical (single) | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "category | \n", + "NaN | \n", + "medical_conditions/medical_conditions.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Both sexes | \n", + "11/21/2018 | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | collection_date | \n", + "collection_timestamp | \n", + "data_source | \n", + "end_month | \n", + "end_year | \n", + "icd11_code | \n", + "medical_condition | \n", + "medical_condition_heb | \n", + "start_month | \n", + "start_year | \n", + "timezone | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-11-28 07:20:59.999913216 | \n", + "2020-12-03 18:35:57.553438208 | \n", + "in system drop down list | \n", + "0 | \n", + "0 | \n", + "DD7Z | \n", + "alopecia areata | \n", + "<NA> | \n", + "0 | \n", + "0 | \n", + "asia/jerusalem | \n", + "54.447672 | \n", + "Female | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-12-12 15:45:56.736616192 | \n", + "2020-12-21 12:36:46.728029440 | \n", + "in system drop down list | \n", + "0 | \n", + "0 | \n", + "<NA> | \n", + "iron deficiency | \n", + "<NA> | \n", + "0 | \n", + "0 | \n", + "asia/jerusalem | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-12-11 12:23:11.603861760 | \n", + "2020-12-25 22:39:46.859224064 | \n", + "in system drop down list | \n", + "0 | \n", + "0 | \n", + "FA25 | \n", + "anal fissure | \n", + "גידול שפיר על בלוטות יותרת התריס | \n", + "0 | \n", + "0 | \n", + "asia/jerusalem | \n", + "45.892093 | \n", + "Male | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-09-01 15:42:04.319813120 | \n", + "2020-09-12 07:02:26.466278400 | \n", + "in system drop down list | \n", + "0 | \n", + "0 | \n", + "5B5K.1Z | \n", + "hyperprolactinaemia | \n", + "<NA> | \n", + "0 | \n", + "1998 | \n", + "asia/jerusalem | \n", + "44.435100 | \n", + "Female | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2021-01-18 16:42:51.806825984 | \n", + "2021-01-07 21:04:15.859397632 | \n", + "in system drop down list | \n", + "0 | \n", + "0 | \n", + "FA25 | \n", + "epilepsy or seizures | \n", + "<NA> | \n", + "0 | \n", + "0 | \n", + "asia/jerusalem | \n", + "44.621536 | \n", + "Male | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "description_string | \n", + "relative_location | \n", + "field_type | \n", + "bulk_dictionary | \n", + "bulk_file_extension | \n", + "data_coding | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "array | \n", + "list_of_tags | \n", + "debut | \n", + "transformation | \n", + "pandas_dtype | \n", + "completed | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_date | \n", + "22 | \n", + "bone_density | \n", + "Collection date (YYYY-MM-DD) | \n", + "Collection date (YYYY-MM-DD) | \n", + "bone_density/bone_density.parquet | \n", + "Date | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "
| timezone | \n", + "22 | \n", + "bone_density | \n", + "Timezone | \n", + "Timezone | \n", + "bone_density/bone_density.parquet | \n", + "Categorical (single) | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "string | \n", + "NaN | \n", + "
| collection_timestamp | \n", + "22 | \n", + "bone_density | \n", + "Collection timestamp | \n", + "Collection timestamp | \n", + "bone_density/bone_density.parquet | \n", + "Date | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "
| body_arm_left_area | \n", + "22 | \n", + "bone_density | \n", + "Body arm left area | \n", + "Body left arm area | \n", + "bone_density/bone_density.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "cm^2 | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "
| body_arm_left_bmc | \n", + "22 | \n", + "bone_density | \n", + "Body arm left bone mineral content | \n", + "Body left arm bone mineral content | \n", + "bone_density/bone_density.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "gram | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| spine_l4_bmc | \n", + "22 | \n", + "bone_density | \n", + "Spine l4 bone mineral content | \n", + "Spine l4 bone mineral content | \n", + "bone_density/bone_density.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "gram | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "
| spine_l4_bmd | \n", + "22 | \n", + "bone_density | \n", + "Spine l4 bone mineral density | \n", + "Spine l4 bone mineral density | \n", + "bone_density/bone_density.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "gram/cm^2 | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "
| spine_l4_t_score | \n", + "22 | \n", + "bone_density | \n", + "Spine l4 t-score | \n", + "Spine l4 t-score | \n", + "bone_density/bone_density.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "
| spine_l4_ya_percent | \n", + "22 | \n", + "bone_density | \n", + "Spine l4 young-adult percent | \n", + "Spine l4 young-adult percent | \n", + "bone_density/bone_density.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "% | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "
| spine_l4_z_score | \n", + "22 | \n", + "bone_density | \n", + "Spine l4 z-score | \n", + "Spine l4 z-score | \n", + "bone_density/bone_density.parquet | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "2020-06-09 | \n", + "NaN | \n", + "float | \n", + "NaN | \n", + "
287 rows × 20 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | body_arm_left_area | \n", + "body_arm_left_bmc | \n", + "body_arm_left_bmd | \n", + "body_arm_right_area | \n", + "body_arm_right_bmc | \n", + "body_arm_right_bmd | \n", + "body_arms_area | \n", + "body_arms_bmc | \n", + "body_arms_bmd | \n", + "body_dose | \n", + "... | \n", + "spine_l4_average_height | \n", + "spine_l4_average_width | \n", + "spine_l4_bmc | \n", + "spine_l4_bmd | \n", + "spine_l4_t_score | \n", + "spine_l4_ya_percent | \n", + "spine_l4_z_score | \n", + "timezone | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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603 rows × 289 columns
\n", + "| \n", + " | \n", + " | \n", + " | body_arm_right_area | \n", + "age | \n", + "sex | \n", + "collection_date | \n", + "
|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "207.315659 | \n", + "54.447672 | \n", + "Female | \n", + "2022-01-16 02:40:27.280033536 | \n", + "
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| 1178277844 | \n", + "10k | \n", + "0 | \n", + "229.866526 | \n", + "44.435100 | \n", + "Female | \n", + "2021-07-26 10:02:07.192320768 | \n", + "
| 1622660825 | \n", + "10k | \n", + "0 | \n", + "109.357390 | \n", + "44.621536 | \n", + "Male | \n", + "2022-05-19 16:16:26.799786240 | \n", + "
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|---|---|---|---|---|---|---|---|---|
| body_arm_right_area | \n", + "497.0 | \n", + "171.332504 | \n", + "84.256019 | \n", + "-851.808271 | \n", + "145.109647 | \n", + "173.682803 | \n", + "204.702379 | \n", + "331.281317 | \n", + "
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| collection_date | \n", + "1.0 | \n", + "Collection date | \n", + "Date sample was given | \n", + "24.0 | \n", + "rna_seq | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Multiple | \n", + "datetime64[ns] | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "2.0 | \n", + "Timezone | \n", + "Timezone of the collection timestamp | \n", + "24.0 | \n", + "rna_seq | \n", + "Categorical (single) | \n", + "Collection time | \n", + "001_03 | \n", + "Multiple | \n", + "category_ordered | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
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| bcl2fastq__yieldq30_pools | \n", + "NaN | \n", + "Bcl2fastq: yieldq30 pools | \n", + "Bcl2fastq: yieldq30 pools | \n", + "NaN | \n", + "NaN | \n", + "columns | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "float | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "batch_metadata_parquet | \n", + "
60795 rows × 25 columns
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| full_counts_raw_parquet | \n", + "6.0 | \n", + "Full counts raw parquet | \n", + "Read count per gene in long table format | \n", + "24.0 | \n", + "rna_seq | \n", + "Bulk file (group) | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| raw_fastq_r1 | \n", + "7.0 | \n", + "Raw fastq R1 | \n", + "Raw reads, including adapters | \n", + "24.0 | \n", + "raw_fastq | \n", + "Fastq file (individual) | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| raw_fastq_r2 | \n", + "8.0 | \n", + "Raw fastq R2 | \n", + "Raw reads, including adapters | \n", + "24.0 | \n", + "raw_fastq | \n", + "Fastq file (individual) | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| trimmed_fastq | \n", + "9.0 | \n", + "Trimmed fastq | \n", + "Trimmed reads using cutadapt and UMI-tools, ex... | \n", + "24.0 | \n", + "trimmed_fastq | \n", + "Fastq file (individual) | \n", + "Primary | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| full_aligned_bam | \n", + "10.0 | \n", + "Full aligned bam | \n", + "Aligned reads using STAR | \n", + "24.0 | \n", + "aligned_bam | \n", + "Bulk file (individual) | \n", + "Supporting | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| full_deduplicated_bam | \n", + "11.0 | \n", + "Full deduplicated bam | \n", + "Aligned deduplicated reads using UMI-tools | \n", + "24.0 | \n", + "deduplicated_bam | \n", + "Bulk file (individual) | \n", + "Supporting | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| batch_metadata_parquet | \n", + "12.0 | \n", + "Batch metadata parquet | \n", + "Batch statistics | \n", + "24.0 | \n", + "rna_seq | \n", + "Bulk file (group) | \n", + "Supporting | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| batch_multiqc_html | \n", + "13.0 | \n", + "Batch multiqc html | \n", + "Batch MultiQC report | \n", + "24.0 | \n", + "multiqc | \n", + "Bulk file (group) | \n", + "Supporting | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| batch_multiqc_json | \n", + "14.0 | \n", + "Batch multiqc json | \n", + "Batch MultiQC json | \n", + "24.0 | \n", + "multiqc | \n", + "Bulk file (group) | \n", + "Supporting | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| reference_transcriptome_gtf | \n", + "15.0 | \n", + "Reference transcriptome gtf | \n", + "Reference transcriptome gtf file | \n", + "24.0 | \n", + "rna_seq | \n", + "Bulk file (group) | \n", + "Auxiliary | \n", + "NaN | \n", + "Multiple | \n", + "string | \n", + "... | \n", + "RNA-seq,transcriptomics,gene expression | \n", + "Accruing | \n", + "Both sexes | \n", + "2021-02-28 | \n", + "NaN | \n", + "rna_seq/rna_seq.parquet | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
10 rows × 25 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | star__avg_input_read_length | \n", + "star__avg_mapped_read_length | \n", + "star__deletion_length | \n", + "star__deletion_rate | \n", + "star__insertion_length | \n", + "star__insertion_rate | \n", + "star__mismatch_rate | \n", + "star__multimapped | \n", + "star__multimapped_percent | \n", + "star__multimapped_toomany | \n", + "... | \n", + "star__total_reads | \n", + "star__uniquely_mapped | \n", + "star__uniquely_mapped_percent | \n", + "star__unmapped_mismatches | \n", + "star__unmapped_mismatches_percent | \n", + "star__unmapped_other | \n", + "star__unmapped_other_percent | \n", + "star__unmapped_tooshort | \n", + "star__unmapped_tooshort_percent | \n", + "full_counts_raw_parquet | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "64.0 | \n", + "63.907715 | \n", + "1.254328 | \n", + "0.03 | \n", + "1.06 | \n", + "0.02 | \n", + "0.501398 | \n", + "2334166 | \n", + "30.192253 | \n", + "44548 | \n", + "... | \n", + "7884805 | \n", + "9710775 | \n", + "67.490942 | \n", + "488274 | \n", + "4.230620 | \n", + "66717 | \n", + "0.935635 | \n", + "575509 | \n", + "3.936708 | \n", + "s3://pheno-synthetic-data/data/rna_seq/counts/... | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "59.0 | \n", + "60.279781 | \n", + "1.104785 | \n", + "0.03 | \n", + "1.07 | \n", + "0.03 | \n", + "0.671484 | \n", + "1057071 | \n", + "21.963655 | \n", + "34641 | \n", + "... | \n", + "5722362 | \n", + "4296709 | \n", + "59.159906 | \n", + "355806 | \n", + "5.337225 | \n", + "211551 | \n", + "3.922517 | \n", + "603457 | \n", + "6.826248 | \n", + "s3://pheno-synthetic-data/data/rna_seq/counts/... | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "61.0 | \n", + "63.125900 | \n", + "1.155458 | \n", + "0.03 | \n", + "1.06 | \n", + "0.02 | \n", + "0.622952 | \n", + "812848 | \n", + "21.223730 | \n", + "28926 | \n", + "... | \n", + "4097362 | \n", + "4160721 | \n", + "68.778721 | \n", + "221778 | \n", + "4.813761 | \n", + "74633 | \n", + "1.814956 | \n", + "267860 | \n", + "5.764203 | \n", + "s3://pheno-synthetic-data/data/rna_seq/counts/... | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "64.0 | \n", + "61.828492 | \n", + "1.201568 | \n", + "0.03 | \n", + "1.09 | \n", + "0.03 | \n", + "0.641170 | \n", + "1053910 | \n", + "20.884387 | \n", + "20765 | \n", + "... | \n", + "5557106 | \n", + "3494681 | \n", + "65.041544 | \n", + "281562 | \n", + "5.665764 | \n", + "137633 | \n", + "0.813096 | \n", + "246332 | \n", + "5.628893 | \n", + "s3://pheno-synthetic-data/data/rna_seq/counts/... | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "63.0 | \n", + "63.755142 | \n", + "1.107315 | \n", + "0.03 | \n", + "1.09 | \n", + "0.02 | \n", + "0.701794 | \n", + "630559 | \n", + "20.019262 | \n", + "25456 | \n", + "... | \n", + "1656341 | \n", + "1691088 | \n", + "57.755566 | \n", + "212400 | \n", + "5.734520 | \n", + "34412 | \n", + "3.111722 | \n", + "259372 | \n", + "6.960548 | \n", + "s3://pheno-synthetic-data/data/rna_seq/counts/... | \n", + "
5 rows × 27 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | count | \n", + "
|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "gene | \n", + "\n", + " |
| 1008549674 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "A1BG | \n", + "1 | \n", + "
| A1BG-AS1 | \n", + "7 | \n", + "||||
| A1CF | \n", + "1 | \n", + "||||
| A2M | \n", + "3 | \n", + "||||
| A2M-AS1 | \n", + "3 | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | count | \n", + "
|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "gene | \n", + "\n", + " |
| 4402274430 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "BZW2 | \n", + "101 | \n", + "
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| LMNA | \n", + "83 | \n", + "||||
| A2M | \n", + "3 | \n", + "||||
| 6992362509 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "BZW2 | \n", + "62 | \n", + "
| LDHB | \n", + "1050 | \n", + "||||
| LMNA | \n", + "53 | \n", + "||||
| SERPINE2 | \n", + "2 | \n", + "||||
| 7624023976 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "BZW2 | \n", + "59 | \n", + "
| LDHB | \n", + "839 | \n", + "||||
| LMNA | \n", + "62 | \n", + "||||
| SERPINE2 | \n", + "8 | \n", + "||||
| 9245061541 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "BZW2 | \n", + "33 | \n", + "
| LDHB | \n", + "449 | \n", + "||||
| LMNA | \n", + "99 | \n", + "||||
| SERPINE2 | \n", + "3 | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "description_string | \n", + "field_type | \n", + "bulk_dictionary | \n", + "bulk_file_extension | \n", + "relative_location | \n", + "data_coding | \n", + "stability | \n", + "... | \n", + "sexed | \n", + "array | \n", + "debut | \n", + "completed | \n", + "transformation | \n", + "list_of_tags | \n", + "pandas_dtype | \n", + "nightingale_metabolomics__biomarker_group | \n", + "nightingale_metabolomics__biomarker_subgroup | \n", + "nightingale_metabolomics__original_name | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_date | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "Collection date (YYYY-MM-DD) | \n", + "Collection date (YYYY-MM-DD) | \n", + "Date | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "Timezone | \n", + "Timezone for timestamp columns | \n", + "Categorical (single) | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "001_03 | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "category | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| collection_timestamp | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "Collection timestamp | \n", + "Collection timestamp | \n", + "Datetime | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| total_c | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "Total-C | \n", + "Total cholesterol | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "float | \n", + "Cholesterol | \n", + "NaN | \n", + "Total_C | \n", + "
| non_hdl_c | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "non-HDL-C | \n", + "Total cholesterol minus HDL-C | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "float | \n", + "Cholesterol | \n", + "NaN | \n", + "non_HDL_C | \n", + "
| remnant_c | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "Remnant-C | \n", + "Remnant cholesterol (non-HDL, non-LDL -cholest... | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "float | \n", + "Cholesterol | \n", + "NaN | \n", + "Remnant_C | \n", + "
| vldl_c | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "VLDL-C | \n", + "VLDL cholesterol | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "float | \n", + "Cholesterol | \n", + "NaN | \n", + "VLDL_C | \n", + "
| clinical_ldl_c | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "Clinical LDL-C | \n", + "Clinical LDL cholesterol | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "float | \n", + "Cholesterol | \n", + "NaN | \n", + "Clinical_LDL_C | \n", + "
| ldl_c | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "LDL-C | \n", + "LDL cholesterol | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "float | \n", + "Cholesterol | \n", + "NaN | \n", + "LDL_C | \n", + "
| hdl_c | \n", + "29 | \n", + "nightingale_metabolomics | \n", + "HDL-C | \n", + "HDL cholesterol | \n", + "Continuous | \n", + "NaN | \n", + "NaN | \n", + "nightingale_metabolomics/nightingale_metabolom... | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "Both sexes | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "float | \n", + "Cholesterol | \n", + "NaN | \n", + "HDL_C | \n", + "
10 rows × 23 columns
\n", + "| \n", + " | count | \n", + "
|---|---|
| nightingale_metabolomics__biomarker_group | \n", + "\n", + " |
| Lipoprotein subclasses | \n", + "98 | \n", + "
| Relative lipoprotein lipid concentrations | \n", + "70 | \n", + "
| Fatty acids | \n", + "18 | \n", + "
| Amino acids | \n", + "10 | \n", + "
| Cholesterol | \n", + "7 | \n", + "
| Other lipids | \n", + "5 | \n", + "
| Glycolysis related metabolites | \n", + "5 | \n", + "
| Triglycerides | \n", + "4 | \n", + "
| Free cholesterol | \n", + "4 | \n", + "
| Phospholipids | \n", + "4 | \n", + "
| Cholesteryl esters | \n", + "4 | \n", + "
| Ketone bodies | \n", + "4 | \n", + "
| Lipoprotein particle concentrations | \n", + "4 | \n", + "
| Total lipids | \n", + "4 | \n", + "
| Apolipoproteins | \n", + "3 | \n", + "
| Lipoprotein particle sizes | \n", + "3 | \n", + "
| Fluid balance | \n", + "2 | \n", + "
| Inflammation | \n", + "1 | \n", + "
| \n", + " | count | \n", + "
|---|---|
| nightingale_metabolomics__biomarker_subgroup | \n", + "\n", + " |
| Fatty acid ratios | \n", + "9 | \n", + "
| Very large VLDL | \n", + "7 | \n", + "
| Chylomicrons and extremely large VLDL | \n", + "7 | \n", + "
| Large VLDL | \n", + "7 | \n", + "
| Medium VLDL | \n", + "7 | \n", + "
| Very small VLDL | \n", + "7 | \n", + "
| Small VLDL | \n", + "7 | \n", + "
| Medium LDL | \n", + "7 | \n", + "
| Small LDL | \n", + "7 | \n", + "
| IDL | \n", + "7 | \n", + "
| Large LDL | \n", + "7 | \n", + "
| Very large HDL | \n", + "7 | \n", + "
| Large HDL | \n", + "7 | \n", + "
| Small HDL | \n", + "7 | \n", + "
| Medium HDL | \n", + "7 | \n", + "
| IDL ratios | \n", + "5 | \n", + "
| Large LDL ratios | \n", + "5 | \n", + "
| Chylomicrons and extremely large VLDL ratios | \n", + "5 | \n", + "
| Very large VLDL ratios | \n", + "5 | \n", + "
| Large VLDL ratios | \n", + "5 | \n", + "
| Medium VLDL ratios | \n", + "5 | \n", + "
| Small VLDL ratios | \n", + "5 | \n", + "
| Very small VLDL ratios | \n", + "5 | \n", + "
| Very large HDL ratios | \n", + "5 | \n", + "
| Large HDL ratios | \n", + "5 | \n", + "
| Medium LDL ratios | \n", + "5 | \n", + "
| Small LDL ratios | \n", + "5 | \n", + "
| Medium HDL ratios | \n", + "5 | \n", + "
| Small HDL ratios | \n", + "5 | \n", + "
| Branched-chain amino acids | \n", + "4 | \n", + "
| Aromatic amino acids | \n", + "2 | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | acetate | \n", + "acetate_tag | \n", + "acetoacetate | \n", + "acetoacetate_tag | \n", + "acetone | \n", + "acetone_tag | \n", + "ala | \n", + "ala_tag | \n", + "albumin | \n", + "albumin_tag | \n", + "... | \n", + "xxl_vldl_pl | \n", + "xxl_vldl_pl_pct | \n", + "xxl_vldl_pl_pct_tag | \n", + "xxl_vldl_pl_tag | \n", + "xxl_vldl_tg | \n", + "xxl_vldl_tg_pct | \n", + "xxl_vldl_tg_pct_tag | \n", + "xxl_vldl_tg_tag | \n", + "age | \n", + "sex | \n", + "
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| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0.007606 | \n", + "None | \n", + "0.038657 | \n", + "None | \n", + "0.005605 | \n", + "None | \n", + "0.475244 | \n", + "None | \n", + "40.293601 | \n", + "None | \n", + "... | \n", + "0.000002 | \n", + "22.623070 | \n", + "[] | \n", + "[Below limit of quantification] | \n", + "0.040703 | \n", + "26.502997 | \n", + "[] | \n", + "[] | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0.014354 | \n", + "None | \n", + "0.012168 | \n", + "None | \n", + "0.007660 | \n", + "None | \n", + "0.404166 | \n", + "None | \n", + "47.737813 | \n", + "None | \n", + "... | \n", + "0.041624 | \n", + "-54.868052 | \n", + "[] | \n", + "[] | \n", + "0.101610 | \n", + "67.763118 | \n", + "[] | \n", + "[] | \n", + "45.892093 | \n", + "Male | \n", + "
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-10-05 23:08:11.799026432 | \n", + "asia/jerusalem | \n", + "2020-03-12 13:36:29.274629888 | \n", + "3.950036 | \n", + "1.244843 | \n", + "0.792733 | \n", + "0.377443 | \n", + "1.806305 | \n", + "2.153646 | \n", + "0.863621 | \n", + "... | \n", + "46.323745 | \n", + "47.095767 | \n", + "43.504024 | \n", + "5.885218 | \n", + "0.029351 | \n", + "56.548433 | \n", + "38.650314 | \n", + "31.972613 | \n", + "10.303203 | \n", + "2.674410 | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2022-06-17 02:33:36.250172416 | \n", + "asia/jerusalem | \n", + "2022-05-11 23:48:41.392433408 | \n", + "4.308295 | \n", + "3.177485 | \n", + "1.428618 | \n", + "0.642049 | \n", + "2.376704 | \n", + "1.719551 | \n", + "1.379317 | \n", + "... | \n", + "43.480754 | \n", + "49.130963 | \n", + "39.187341 | \n", + "10.189239 | \n", + "2.677067 | \n", + "55.514254 | \n", + "42.390962 | \n", + "29.211053 | \n", + "10.617660 | \n", + "1.253484 | \n", + "
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5 rows × 253 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | total_c_tag | \n", + "non_hdl_c_tag | \n", + "remnant_c_tag | \n", + "vldl_c_tag | \n", + "clinical_ldl_c_tag | \n", + "ldl_c_tag | \n", + "hdl_c_tag | \n", + "total_tg_tag | \n", + "vldl_tg_tag | \n", + "ldl_tg_tag | \n", + "... | \n", + "m_hdl_pl_pct_tag | \n", + "m_hdl_c_pct_tag | \n", + "m_hdl_ce_pct_tag | \n", + "m_hdl_fc_pct_tag | \n", + "m_hdl_tg_pct_tag | \n", + "s_hdl_pl_pct_tag | \n", + "s_hdl_c_pct_tag | \n", + "s_hdl_ce_pct_tag | \n", + "s_hdl_fc_pct_tag | \n", + "s_hdl_tg_pct_tag | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "... | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "[] | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "[] | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "... | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "[] | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "[] | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "... | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "[] | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "[] | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "... | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "[Below limit of quantification] | \n", + "None | \n", + "None | \n", + "None | \n", + "None | \n", + "[] | \n", + "
5 rows × 250 columns
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|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " |
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603 rows × 1 columns
\n", + "| \n", + " | count | \n", + "unique | \n", + "top | \n", + "freq | \n", + "
|---|---|---|---|---|
| s_hdl_tg_pct_tag | \n", + "603 | \n", + "597 | \n", + "[Below limit of quantification] | \n", + "7 | \n", + "
| m_vldl_fc_pct_tag | \n", + "603 | \n", + "592 | \n", + "[Below limit of quantification] | \n", + "12 | \n", + "
| xxl_vldl_l_tag | \n", + "603 | \n", + "508 | \n", + "[Below limit of quantification] | \n", + "96 | \n", + "
| creatinine_tag | \n", + "603 | \n", + "581 | \n", + "[Isopropyl alcohol] | \n", + "13 | \n", + "
| s_hdl_tg_tag | \n", + "603 | \n", + "593 | \n", + "[Below limit of quantification] | \n", + "11 | \n", + "
| bohbutyrate_tag | \n", + "603 | \n", + "528 | \n", + "[Technical error] | \n", + "38 | \n", + "
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| xxl_vldl_pl_pct_tag | \n", + "603 | \n", + "352 | \n", + "[Below limit of quantification] | \n", + "252 | \n", + "
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| \n", + " | collection_date | \n", + "vldl_c | \n", + "ldl_c | \n", + "
|---|---|---|---|
| folder_id | \n", + "29 | \n", + "29 | \n", + "29 | \n", + "
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| field_string | \n", + "Collection date (YYYY-MM-DD) | \n", + "VLDL-C | \n", + "LDL-C | \n", + "
| description_string | \n", + "Collection date (YYYY-MM-DD) | \n", + "VLDL cholesterol | \n", + "LDL cholesterol | \n", + "
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| strata | \n", + "Collection time | \n", + "Primary | \n", + "Primary | \n", + "
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| array | \n", + "Single | \n", + "Single | \n", + "Single | \n", + "
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| pandas_dtype | \n", + "datetime64[ns] | \n", + "float | \n", + "float | \n", + "
| nightingale_metabolomics__biomarker_group | \n", + "NaN | \n", + "Cholesterol | \n", + "Cholesterol | \n", + "
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| nightingale_metabolomics__original_name | \n", + "NaN | \n", + "VLDL_C | \n", + "LDL_C | \n", + "
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| min | \n", + "2019-05-07 00:00:00 | \n", + "0.114238 | \n", + "0.730071 | \n", + "
| max | \n", + "2022-08-02 00:00:00 | \n", + "1.680581 | \n", + "3.596613 | \n", + "
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| std | \n", + "NaN | \n", + "0.307569 | \n", + "0.60124 | \n", + "
| \n", + " | \n", + " | \n", + " | total_c | \n", + "age | \n", + "sex | \n", + "collection_date | \n", + "
|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "5.041900 | \n", + "54.447672 | \n", + "Female | \n", + "2021-07-28 17:09:25.670526464 | \n", + "
| 5027574288 | \n", + "10k | \n", + "0 | \n", + "3.950036 | \n", + "54.169913 | \n", + "Male | \n", + "2020-10-05 23:08:11.799026432 | \n", + "
| 7783260382 | \n", + "10k | \n", + "0 | \n", + "4.308295 | \n", + "45.892093 | \n", + "Male | \n", + "2022-06-17 02:33:36.250172416 | \n", + "
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| 1622660825 | \n", + "10k | \n", + "0 | \n", + "4.920146 | \n", + "44.621536 | \n", + "Male | \n", + "2020-01-06 13:56:02.866267392 | \n", + "
| \n", + " | count | \n", + "mean | \n", + "std | \n", + "min | \n", + "25% | \n", + "50% | \n", + "75% | \n", + "max | \n", + "
|---|---|---|---|---|---|---|---|---|
| total_c | \n", + "500.0 | \n", + "4.50284 | \n", + "1.270548 | \n", + "2.128205 | \n", + "3.624979 | \n", + "4.382713 | \n", + "5.201225 | \n", + "9.009278 | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_dictionary | \n", + "bulk_file_extension | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "pandas_dtype | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "43 | \n", + "covid | \n", + "Collection timestamp | \n", + "covid/covid.parquet | \n", + "NaN | \n", + "NaN | \n", + "Timestamp of measurements collection | \n", + "Datetime | \n", + "Single | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "4/26/2021 | \n", + "NaN | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "
| collection_date | \n", + "43 | \n", + "covid | \n", + "Collection date | \n", + "covid/covid.parquet | \n", + "NaN | \n", + "NaN | \n", + "Date of measurments collection | \n", + "Date | \n", + "Single | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "4/26/2021 | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "
| timezone | \n", + "43 | \n", + "covid | \n", + "Timezone | \n", + "covid/covid.parquet | \n", + "NaN | \n", + "NaN | \n", + "Timezone of the measurments | \n", + "Categorical (single) | \n", + "Single | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "4/26/2021 | \n", + "NaN | \n", + "category | \n", + "NaN | \n", + "
| covid_vaccinated | \n", + "43 | \n", + "covid | \n", + "Were you vaccinated for Covid? | \n", + "covid/covid.parquet | \n", + "NaN | \n", + "NaN | \n", + "Were you vaccinated for Covid? | \n", + "Categorical (single) | \n", + "Single | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "4/26/2021 | \n", + "NaN | \n", + "int | \n", + "7 | \n", + "
| covid_vaccination_doses_number | \n", + "43 | \n", + "covid | \n", + "Number of vaccine doses | \n", + "covid/covid.parquet | \n", + "NaN | \n", + "NaN | \n", + "Number of vaccine doses | \n", + "Integer | \n", + "Single | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "4/26/2021 | \n", + "NaN | \n", + "int | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | covid_vaccination_doses_number | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "3 | \n", + "54.447672 | \n", + "Female | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0 | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "4 | \n", + "45.892093 | \n", + "Male | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2 | \n", + "44.435100 | \n", + "Female | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "3 | \n", + "44.621536 | \n", + "Male | \n", + "
| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | covid_vaccination_manufacturer | \n", + "
|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "Pfizer | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | covid_vaccinated | \n", + "
|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "
| \n", + " | Unnamed: 0 | \n", + "folder_id | \n", + "feature_set | \n", + "field_string | \n", + "is_big_data | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "... | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "sensitive_data_flag | \n", + "sensitive_notes | \n", + "debut | \n", + "completed | \n", + "customer_field | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "0 | \n", + "44.0 | \n", + "menstrual_cycle | \n", + "Collection timestamp | \n", + "False | \n", + "sex_specific_factors/menstrual_cycle_survey.pa... | \n", + "NaN | \n", + "NaN | \n", + "Timestamp of measurements collection | \n", + "Datetime | \n", + "... | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "12-06-2022 | \n", + "NaN | \n", + "ready | \n", + "NaN | \n", + "
| collection_date | \n", + "1 | \n", + "44.0 | \n", + "menstrual_cycle | \n", + "Collection date | \n", + "False | \n", + "sex_specific_factors/menstrual_cycle_survey.pa... | \n", + "NaN | \n", + "NaN | \n", + "Date of measurments collection | \n", + "Date | \n", + "... | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "12-06-2022 | \n", + "NaN | \n", + "ready | \n", + "NaN | \n", + "
| timezone | \n", + "2 | \n", + "44.0 | \n", + "menstrual_cycle | \n", + "Timezone | \n", + "False | \n", + "sex_specific_factors/menstrual_cycle_survey.pa... | \n", + "NaN | \n", + "NaN | \n", + "Timezone of the measurments | \n", + "Categorical (single) | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "12-06-2022 | \n", + "NaN | \n", + "ready | \n", + "NaN | \n", + "
| menstural_cycle_past_3_months | \n", + "3 | \n", + "44.0 | \n", + "menstrual_cycle | \n", + "did_menstruation_occur | \n", + "False | \n", + "sex_specific_factors/menstrual_cycle_survey.pa... | \n", + "NaN | \n", + "NaN | \n", + "Did you get a menstural cycle during the previ... | \n", + "Categorical (single) | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Females only | \n", + "NaN | \n", + "NaN | \n", + "12-06-2022 | \n", + "NaN | \n", + "ready | \n", + "7 | \n", + "
| menstural_cycle_index | \n", + "4 | \n", + "44.0 | \n", + "menstrual_cycle | \n", + "cycle_index | \n", + "False | \n", + "sex_specific_factors/menstrual_cycle_survey.pa... | \n", + "NaN | \n", + "NaN | \n", + "Index of the menstural cycle recorded | \n", + "Integer | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Females only | \n", + "NaN | \n", + "NaN | \n", + "12-06-2022 | \n", + "NaN | \n", + "ready | \n", + "NaN | \n", + "
5 rows × 25 columns
\n", + "| \n", + " | \n", + " | \n", + " | \n", + " | menstural_cycle_past_3_months | \n", + "menstural_cycle_index | \n", + "menstural_cycle_start_date | \n", + "menstural_cycle_start_description | \n", + "menstural_cycle_end_date | \n", + "menstural_cycle_end_description | \n", + "survey_format | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaT | \n", + "NaN | \n", + "1678-03-29 15:02:57.546895360 | \n", + "NaN | \n", + "<NA> | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaT | \n", + "NaN | \n", + "NaT | \n", + "NaN | \n", + "<NA> | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "No | \n", + "0 | \n", + "NaT | \n", + "NaN | \n", + "2015-01-25 11:05:45.700192512 | \n", + "NaN | \n", + "v2 | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaT | \n", + "NaN | \n", + "NaT | \n", + "NaN | \n", + "<NA> | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaT | \n", + "NaN | \n", + "1677-10-23 19:59:35.895776256 | \n", + "NaN | \n", + "<NA> | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | health_male_past_first_facial_hear_age | \n", + "health_male_past_voice_break_age | \n", + "health_male_current_children_number | \n", + "health_females_past_mammogram | \n", + "health_females_past_mammogram_years | \n", + "health_females_past_cervical_smear | \n", + "health_females_past_cervical_smear_years | \n", + "health_females_past_period_start_age | \n", + "health_females_past_pill_used | \n", + "health_females_past_pill_start_age | \n", + "health_females_past_pill_end_age | \n", + "health_females_past_hrt | \n", + "health_females_past_hrt_start_age | \n", + "health_females_past_hrt_end_age | \n", + "health_females_past_hysterectomy | \n", + "health_females_hysterectomy_age | \n", + "health_females_bilateral_oophorectomy | \n", + "health_females_bilateral_oophorectomy_age | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "About average age | \n", + "Older than average | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "About average age | \n", + "NaN | \n", + "0 | \n", + "No | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "No | \n", + "0 | \n", + "37 | \n", + "No | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | menarche_age | \n", + "is_getting_period_ques | \n", + "menopause_age | \n", + "regular_periods_past | \n", + "regular_periods_present | \n", + "menstrual_cycle_average | \n", + "period_duration_days | \n", + "tampons_pads_average_per_day | \n", + "Intermenstrual_bleeding | \n", + "period_pain | \n", + "... | \n", + "women_symptoms | \n", + "hot_flashes_age | \n", + "vaginal_dryness_age | \n", + "low_libido_age | \n", + "mood_changes_age | \n", + "dry_skin_age | \n", + "facial_hair_age | \n", + "voice_changes_age | \n", + "sperm_count_test | \n", + "sperm_count_test_results | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "Yes | \n", + "6 | \n", + "0 | \n", + "3 | \n", + "NaN | \n", + "No | \n", + "... | \n", + "[] | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "15 | \n", + "14 | \n", + "No | \n", + "NaN | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "[] | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "[] | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "[] | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "[] | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "
5 rows × 22 columns
\n", + "| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | Unnamed: 0 | \n", + "folder_id | \n", + "feature_set | \n", + "field_string | \n", + "is_big_data | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "... | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "sensitive_data_flag | \n", + "sensitive_notes | \n", + "debut | \n", + "completed | \n", + "customer_field | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| menstural_cycle_index | \n", + "4 | \n", + "44.0 | \n", + "menstrual_cycle | \n", + "cycle_index | \n", + "False | \n", + "sex_specific_factors/menstrual_cycle_survey.pa... | \n", + "NaN | \n", + "NaN | \n", + "Index of the menstural cycle recorded | \n", + "Integer | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Females only | \n", + "NaN | \n", + "NaN | \n", + "12-06-2022 | \n", + "NaN | \n", + "ready | \n", + "NaN | \n", + "
| menarche_age | \n", + "14 | \n", + "44.0 | \n", + "initial_medical | \n", + "Menarche age | \n", + "False | \n", + "sex_specific_factors/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "At what age did you get your first period? | \n", + "Integer | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Females only | \n", + "NaN | \n", + "NaN | \n", + "2020-02-26 00:00:00 | \n", + "NaN | \n", + "ready | \n", + "NaN | \n", + "
| menopause_age | \n", + "16 | \n", + "44.0 | \n", + "initial_medical | \n", + "Menopause age | \n", + "False | \n", + "sex_specific_factors/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Age when you got your last period? | \n", + "Integer | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Females only | \n", + "NaN | \n", + "NaN | \n", + "2020-02-26 00:00:00 | \n", + "NaN | \n", + "ready | \n", + "NaN | \n", + "
| menstrual_cycle_average | \n", + "19 | \n", + "44.0 | \n", + "initial_medical | \n", + "Menstrual cycle average | \n", + "False | \n", + "sex_specific_factors/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "What is the average time between the cycles? (... | \n", + "Integer | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Females only | \n", + "NaN | \n", + "NaN | \n", + "2020-02-26 00:00:00 | \n", + "NaN | \n", + "ready | \n", + "NaN | \n", + "
| period_duration_days | \n", + "20 | \n", + "44.0 | \n", + "initial_medical | \n", + "Period duration days | \n", + "False | \n", + "sex_specific_factors/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "What is the average duration of each period? (... | \n", + "Integer | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Females only | \n", + "NaN | \n", + "NaN | \n", + "2020-02-26 00:00:00 | \n", + "NaN | \n", + "ready | \n", + "NaN | \n", + "
5 rows × 25 columns
\n", + "| \n", + " | \n", + " | \n", + " | extra_health_females_first_mestural_cycle_age | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "54.447672 | \n", + "Female | \n", + "
| 5027574288 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "45.892093 | \n", + "Male | \n", + "
| 1178277844 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "44.435100 | \n", + "Female | \n", + "
| 1622660825 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "44.621536 | \n", + "Male | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "pandas_dtype | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "49 | \n", + "initial_medical | \n", + "Collection timestamp | \n", + "medical_symptoms/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Timestamp of measurements collection | \n", + "Datetime | \n", + "Single | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "
| collection_date | \n", + "49 | \n", + "initial_medical | \n", + "Collection date | \n", + "medical_symptoms/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Date of measurments collection | \n", + "Date | \n", + "Single | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "
| timezone | \n", + "49 | \n", + "initial_medical | \n", + "Timezone | \n", + "medical_symptoms/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Timezone of the measurments | \n", + "Categorical (single) | \n", + "Single | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "string | \n", + "NaN | \n", + "
| are_you_suffering_for_the_following_symptoms | \n", + "49 | \n", + "initial_medical | \n", + "Are you suffering for the following symptoms | \n", + "medical_symptoms/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Are you suffering for the following symptoms | \n", + "Categorical (multiple) | \n", + "Single | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "object | \n", + "049_01 | \n", + "
| how_often_headache | \n", + "49 | \n", + "initial_medical | \n", + "How often headache | \n", + "medical_symptoms/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "How often do you have a headaches? | \n", + "Categorical (single) | \n", + "Single | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "int | \n", + "049_02 | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | abdomen_pain_frequency_past_3_months | \n", + "abdomen_pain_women_during_period | \n", + "abdomen_pain_past_6_months | \n", + "abdomen_pain_improve_after_bowl_movement | \n", + "abdomen_pain_increases_bowl_movements | \n", + "abdomen_pain_decreases_bowl_movements | \n", + "soft_stool_during_abdomen_pain | \n", + "hard_stool_during_abdomen_pain | \n", + "hard_stool_frequency_past_3_months | \n", + "soft_stool_frequency_past_3_months | \n", + "... | \n", + "history_diagnoses_celiac | \n", + "history_diagnoses_celiac_method | \n", + "history_diagnoses_ibs | \n", + "history_ibs_symptoms_speed | \n", + "history_ibs_first_symptoms_infection | \n", + "history_ibs_first_symptoms_infection_choice | \n", + "history_ibs_first_symptoms_fever | \n", + "history_ibs_first_symptoms_diarrhoea | \n", + "history_ibs_first_symptoms_bloody_diarrhoea | \n", + "history_ibs_first_symptoms_vomiting | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "Two to three days a month | \n", + "NaN | \n", + "NaN | \n", + "Sometimes | \n", + "Often | \n", + "Sometimes | \n", + "Sometimes | \n", + "Sometimes | \n", + "Sometimes | \n", + "Sometimes | \n", + "... | \n", + "No | \n", + "NaN | \n", + "No | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "One day a week | \n", + "No | \n", + "NaN | \n", + "Most of the time | \n", + "Often | \n", + "Sometimes | \n", + "Sometimes | \n", + "Sometimes | \n", + "Sometimes | \n", + "Sometimes | \n", + "... | \n", + "No | \n", + "NaN | \n", + "No | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "Never | \n", + "No | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Never | \n", + "NaN | \n", + "Never | \n", + "Never | \n", + "Never | \n", + "... | \n", + "No | \n", + "NaN | \n", + "No | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "Never | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Never | \n", + "Never | \n", + "... | \n", + "No | \n", + "NaN | \n", + "No | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
5 rows × 53 columns
\n", + "| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "pandas_dtype | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "50 | \n", + "initial_medical | \n", + "Collection timestamp | \n", + "medical_procedures/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Timestamp of measurements collection | \n", + "Datetime | \n", + "Single | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "
| collection_date | \n", + "50 | \n", + "initial_medical | \n", + "Collection date | \n", + "medical_procedures/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Date of measurments collection | \n", + "Date | \n", + "Single | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "
| timezone | \n", + "50 | \n", + "initial_medical | \n", + "Timezone | \n", + "medical_procedures/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Timezone of the measurments | \n", + "Categorical (single) | \n", + "Single | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "category | \n", + "NaN | \n", + "
| fertility_treatment_final_year | \n", + "50 | \n", + "initial_medical | \n", + "Fertility treatment final year | \n", + "medical_procedures/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Fertility treatment final year | \n", + "Continuous | \n", + "Single | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Females only | \n", + "2/26/2020 | \n", + "NaN | \n", + "int | \n", + "NaN | \n", + "
| invasive_procedure | \n", + "50 | \n", + "initial_medical | \n", + "Invasive procedure | \n", + "medical_procedures/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Have you previously undergone surgery or an in... | \n", + "Categorical (single) | \n", + "Single | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "int | \n", + "21 | \n", + "
| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| ... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "... | \n", + "
| 1323 | \n", + "009_03 | \n", + "0 | \n", + "5.3.81.5 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Sleep monitoring processing software version | \n", + "NaN | \n", + "
| 1324 | \n", + "009_04 | \n", + "0 | \n", + "Inconclusive REM | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Sleep monitoring warning: Inconclusive REM | \n", + "NaN | \n", + "
| 1325 | \n", + "009_04 | \n", + "1 | \n", + "Respiratory indices Not Available (N/A) due to... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Sleep monitoring warning: Respiratory indices ... | \n", + "NaN | \n", + "
| 1326 | \n", + "009_04 | \n", + "2 | \n", + "Insufficient signals for Respiratory Indices c... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Sleep monitoring warning: Insufficient signals... | \n", + "NaN | \n", + "
| 1327 | \n", + "009_04 | \n", + "3 | \n", + "Incomplete analysis due to a Noisy PAT signal | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Sleep monitoring warning: Incomplete analysis ... | \n", + "NaN | \n", + "
1328 rows × 11 columns
\n", + "| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "pandas_dtype | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| invasive_procedure_type | \n", + "50 | \n", + "initial_medical | \n", + "Invasive procedure type | \n", + "medical_procedures/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Please select from the following list of invas... | \n", + "Categorical (multiple) | \n", + "Multiple | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "object | \n", + "050_01 | \n", + "
| number_of_hospitalization_this_year | \n", + "50 | \n", + "initial_medical | \n", + "Number of hospitalization this year | \n", + "medical_procedures/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Please specify how many times have you been ho... | \n", + "Categorical (multiple) | \n", + "Multiple | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "object | \n", + "050_03 | \n", + "
| performed_tests | \n", + "50 | \n", + "initial_medical | \n", + "Performed tests | \n", + "medical_procedures/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Did you perform any of the following tests | \n", + "Categorical (multiple) | \n", + "Multiple | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "object | \n", + "050_02 | \n", + "
| polyps_information | \n", + "50 | \n", + "initial_medical | \n", + "Polyps information | \n", + "medical_procedures/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Please detail any findings as far as you know | \n", + "Categorical (multiple) | \n", + "Multiple | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "object | \n", + "050_05 | \n", + "
| eco_heart_past_year | \n", + "50 | \n", + "follow_up_medical | \n", + "What surgery | \n", + "medical_procedures/follow_up_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "(22)? Have you had one of these tests in the l... | \n", + "Categorical (multiple) | \n", + "Multiple | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "object | \n", + "046_01 | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | performed_tests | \n", + "
|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[Eco -heart at rest, Echo heart in the effort,... | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[Heart mapping, Doppler of the neck arteries, ... | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[Doppler of the neck arteries, An endoscopic e... | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[Lung function, An endoscopic examination of t... | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "[Lung function, (CT, MRI) brain imaging] | \n", + "
| \n", + " | folder_id | \n", + "field_string | \n", + "description_string | \n", + "feature_set | \n", + "field_type | \n", + "strata | \n", + "data_coding | \n", + "array | \n", + "units | \n", + "sexed | \n", + "pandas_dtype | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "relative_location | \n", + "sampling_rate | \n", + "stability | \n", + "debut | \n", + "completed | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "51 | \n", + "Collection time | \n", + "Collection time | \n", + "children | \n", + "Datetime | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "NaN | \n", + "NaN | \n", + "children/children.parquet | \n", + "NaN | \n", + "Accruing | \n", + "2020-02-26 | \n", + "NaN | \n", + "
| collection_date | \n", + "51 | \n", + "Collection date | \n", + "Collection date | \n", + "children | \n", + "Date | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "datetime64[ns] | \n", + "NaN | \n", + "NaN | \n", + "children/children.parquet | \n", + "NaN | \n", + "Accruing | \n", + "2020-02-26 | \n", + "NaN | \n", + "
| timezone | \n", + "51 | \n", + "Timezone | \n", + "Timezone | \n", + "children | \n", + "Categorical (single) | \n", + "Collection time | \n", + "NaN | \n", + "Single | \n", + "NaN | \n", + "NaN | \n", + "category | \n", + "NaN | \n", + "NaN | \n", + "children/children.parquet | \n", + "NaN | \n", + "Accruing | \n", + "2020-02-26 | \n", + "NaN | \n", + "
| pregnancies_number | \n", + "51 | \n", + "Pregnancies number | \n", + "How often have you been pregnant? | \n", + "children | \n", + "Integer | \n", + "Primary | \n", + "NaN | \n", + "Single | \n", + "NaN | \n", + "Females only | \n", + "int | \n", + "NaN | \n", + "NaN | \n", + "children/children.parquet | \n", + "NaN | \n", + "Accruing | \n", + "2020-02-26 | \n", + "NaN | \n", + "
| pre_pregnancy_genetic_testing | \n", + "51 | \n", + "Pre pregnancy genetic testing | \n", + "Have you done genetic tests before getting pre... | \n", + "children | \n", + "Categorical (single) | \n", + "Primary | \n", + "7.0 | \n", + "Single | \n", + "NaN | \n", + "Females only | \n", + "int | \n", + "NaN | \n", + "NaN | \n", + "children/children.parquet | \n", + "NaN | \n", + "Accruing | \n", + "2020-02-26 | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | collection_timestamp | \n", + "collection_date | \n", + "timezone | \n", + "pregnancies_number | \n", + "pre_pregnancy_genetic_testing | \n", + "number_of_children | \n", + "pregnancy_end_week_1 | \n", + "birth_weight_1 | \n", + "pregnancy_end_week_2 | \n", + "birth_weight_2 | \n", + "... | \n", + "pregnancy_end_week_5 | \n", + "birth_weight_5 | \n", + "pregnancy_end_week_6 | \n", + "birth_weight_6 | \n", + "pregnancy_end_week_7 | \n", + "birth_weight_7 | \n", + "pregnancy_end_week_8 | \n", + "birth_weight_8 | \n", + "pregnancy_end_week_9 | \n", + "birth_weight_9 | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2023-02-14 08:49:39.308543744 | \n", + "2020-09-17 08:21:06.607670528 | \n", + "asia/jerusalem | \n", + "3 | \n", + "Yes | \n", + "0 | \n", + "0 | \n", + "-1493.785427 | \n", + "0 | \n", + "NaN | \n", + "... | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "-1499.484055 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2021-07-31 22:20:24.229533952 | \n", + "2021-08-26 07:44:05.336204800 | \n", + "asia/jerusalem | \n", + "4 | \n", + "Yes | \n", + "0 | \n", + "0 | \n", + "-1495.779281 | \n", + "0 | \n", + "-1499.853746 | \n", + "... | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "-1499.292145 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2022-03-31 23:23:11.161917952 | \n", + "2022-04-03 02:46:17.261562368 | \n", + "asia/jerusalem | \n", + "2 | \n", + "Yes | \n", + "0 | \n", + "0 | \n", + "-1498.505181 | \n", + "0 | \n", + "-1496.023989 | \n", + "... | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2021-05-11 03:35:11.029163776 | \n", + "2021-06-07 09:31:57.275273216 | \n", + "asia/jerusalem | \n", + "0 | \n", + "NaN | \n", + "2 | \n", + "39 | \n", + "6.500000 | \n", + "0 | \n", + "6.500000 | \n", + "... | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "-1499.761653 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2020-09-06 07:50:19.698051584 | \n", + "2020-08-10 21:38:27.098256640 | \n", + "asia/jerusalem | \n", + "0 | \n", + "NaN | \n", + "3 | \n", + "39 | \n", + "6.500000 | \n", + "39 | \n", + "6.500000 | \n", + "... | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "-1499.118276 | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "
5 rows × 24 columns
\n", + "| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 5 | \n", + "062_03 | \n", + "2 | \n", + "A relative has been diagnosed as a BRCA carrier | \n", + "קרוב/ת משפחה אובחנ/ה כנשא/ית BRCA | \n", + "brca_indication_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 6 | \n", + "062_03 | \n", + "3 | \n", + "I got breast cancer | \n", + "חליתי בסרטן השד | \n", + "brca_indication_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 7 | \n", + "062_03 | \n", + "4 | \n", + "I got ovarian cancer (relevant to women) | \n", + "חליתי בסרטן השחלה (רלוונטי לנשים) | \n", + "brca_indication_4 | \n", + "Females only | \n", + "NaN | \n", + "NaN | \n", + "if 062_03=5 then do not allow | \n", + "NaN | \n", + "NaN | \n", + "
| 8 | \n", + "062_03 | \n", + "5 | \n", + "I got prostate cancer (prostate) (relevant to ... | \n", + "חליתי בסרטן הערמונית (פרוסטטה) (רלוונטי לגברים) | \n", + "brca_indication_5 | \n", + "Males only | \n", + "NaN | \n", + "NaN | \n", + "if 062_03=4 then do not allow | \n", + "NaN | \n", + "NaN | \n", + "
| 9 | \n", + "062_03 | \n", + "6 | \n", + "As part of a screening test | \n", + "במסגרת בדיקת סקר | \n", + "brca_indication_6 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| sudden_death_family | \n", + "52 | \n", + "initial_medical | \n", + "Sudden death family | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Has one or more of your close family members d... | \n", + "Categorical (single) | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "21 | \n", + "
| family_history | \n", + "52 | \n", + "initial_medical | \n", + "Family history | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Has one or more of your close family members s... | \n", + "Categorical (multiple) | \n", + "Multiple | \n", + "object | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "052_01 | \n", + "
| hypertension_family_number | \n", + "52 | \n", + "initial_medical | \n", + "Hypertension family number | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "How many of your close family members have hig... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "
| hyperlipidemia_family_number | \n", + "52 | \n", + "initial_medical | \n", + "Hyperlipidemia family number | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "How many of your close family members have ele... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "
| type_1_diabetes_family_number | \n", + "52 | \n", + "initial_medical | \n", + "Type 1 diabetes family number | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "How many of your close family members have typ... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | early_life_breastfeeding | \n", + "early_life_comparative_body_weight | \n", + "early_life_comparative_body_height | \n", + "early_life_handedness | \n", + "early_life_adopted | \n", + "early_life_multiple_birth | \n", + "early_life_mother_smoking | \n", + "family_history_father_alive | \n", + "family_history_adopted_father_alive | \n", + "family_history_current_father_age | \n", + "... | \n", + "family_history_number_adopted_brothers | \n", + "family_history_number_full_sisters | \n", + "family_history_number_adopted_sisters | \n", + "family_history_past_siblings_illness_1 | \n", + "family_history_past_adopted_siblings_illness_1 | \n", + "family_history_past_siblings_illness_2 | \n", + "family_history_past_adopted_siblings_illness_2 | \n", + "family_history_number_older_siblings | \n", + "family_history_non_accidental_death | \n", + "data_source | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "No | \n", + "NaN | \n", + "0 | \n", + "... | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "[None of the above (group 2), Do not know (gro... | \n", + "[] | \n", + "[None of the above (group 2)] | \n", + "[] | \n", + "0 | \n", + "No | \n", + "follow_up_ukbb_survey | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "... | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "[Heart disease] | \n", + "[] | \n", + "[] | \n", + "[] | \n", + "0 | \n", + "NaN | \n", + "<NA> | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "No | \n", + "Thinner | \n", + "Shorter | \n", + "Right-handed | \n", + "No | \n", + "No | \n", + "No | \n", + "No | \n", + "NaN | \n", + "0 | \n", + "... | \n", + "0 | \n", + "1 | \n", + "0 | \n", + "[None of the above (group 2)] | \n", + "[] | \n", + "[None of the above (group 2)] | \n", + "[] | \n", + "0 | \n", + "No | \n", + "initial_ukbb_survey | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Right-handed | \n", + "NaN | \n", + "NaN | \n", + "No | \n", + "No | \n", + "NaN | \n", + "0 | \n", + "... | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "[None of the above (group 2), Do not know (gro... | \n", + "[] | \n", + "[None of the above (group 2)] | \n", + "[] | \n", + "0 | \n", + "No | \n", + "follow_up_ukbb_survey | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "Do not know | \n", + "About average | \n", + "About average | \n", + "Right-handed | \n", + "No | \n", + "No | \n", + "No | \n", + "Yes | \n", + "NaN | \n", + "72 | \n", + "... | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "[None of the above (group 2), Do not know (gro... | \n", + "[] | \n", + "[None of the above (group 2)] | \n", + "[] | \n", + "0 | \n", + "No | \n", + "initial_ukbb_survey | \n", + "
5 rows × 38 columns
\n", + "| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| hypertension_family_number | \n", + "52 | \n", + "initial_medical | \n", + "Hypertension family number | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "How many of your close family members have hig... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "
| hyperlipidemia_family_number | \n", + "52 | \n", + "initial_medical | \n", + "Hyperlipidemia family number | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "How many of your close family members have ele... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "
| type_1_diabetes_family_number | \n", + "52 | \n", + "initial_medical | \n", + "Type 1 diabetes family number | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "How many of your close family members have typ... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "
| type_2_diabetes_family_number | \n", + "52 | \n", + "initial_medical | \n", + "Type 2 diabetes family number | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "How many of your close family members have typ... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "
| stroke_family_number | \n", + "52 | \n", + "initial_medical | \n", + "Stroke family number | \n", + "family_history/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "How many of your close family members have had... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | hypertension_family_number | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "54.447672 | \n", + "Female | \n", + "
| 5027574288 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "45.892093 | \n", + "Male | \n", + "
| 1178277844 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "44.435100 | \n", + "Female | \n", + "
| 1622660825 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "44.621536 | \n", + "Male | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "array | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "53 | \n", + "initial_medical | \n", + "Collection timestamp | \n", + "sociodemographics/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Timestamp of measurements collection | \n", + "Datetime | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "Single | \n", + "
| collection_date | \n", + "53 | \n", + "initial_medical | \n", + "Collection date | \n", + "sociodemographics/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Date of measurments collection | \n", + "Date | \n", + "datetime64[ns] | \n", + "Accruing | \n", + "Time | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "Single | \n", + "
| timezone | \n", + "53 | \n", + "initial_medical | \n", + "Timezone | \n", + "sociodemographics/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Timezone of the measurments | \n", + "Categorical (single) | \n", + "category | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "Single | \n", + "
| DOB | \n", + "53 | \n", + "initial_medical | \n", + "DOB | \n", + "sociodemographics/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Birth year | \n", + "Integer | \n", + "int | \n", + "Accruing | \n", + "year | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "Single | \n", + "
| country_of_birth | \n", + "53 | \n", + "initial_medical | \n", + "Country of birth | \n", + "sociodemographics/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Birth Land | \n", + "Categorical (single) | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "053_01 | \n", + "Single | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | study_family_member | \n", + "study_family_member_participant_id | \n", + "study_family_member_relationship | \n", + "study_household_member | \n", + "study_household_member_participant_id | \n", + "domestic_household_type | \n", + "domestic_household_appliances | \n", + "domestic_household_years | \n", + "domestic_household_people_number | \n", + "domestic_household_people_relationship | \n", + "... | \n", + "extra_domestic_past_pets | \n", + "extra_domestic_current_pets | \n", + "extra_domestic_current_pets_type | \n", + "extra_domestic_residence_area_type | \n", + "exrta_domestic_current_assisted_living | \n", + "extra_army_past_service | \n", + "extra_army_past_position | \n", + "extra_army_past_duration | \n", + "domestic_job_home_days | \n", + "data_source | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "No | \n", + "0 | \n", + "NaN | \n", + "No | \n", + "0 | \n", + "A flat, maisonette or apartment | \n", + "[] | \n", + "7 | \n", + "3 | \n", + "[Husband, wife or partner, Son and/or daughter... | \n", + "... | \n", + "No | \n", + "No | \n", + "[Parrot] | \n", + "City | \n", + "No | \n", + "Yes | \n", + "Combat soldier | \n", + "8 | \n", + "0 | \n", + "initial_ukbb_survey | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "No | \n", + "3593202 | \n", + "NaN | \n", + "No | \n", + "0 | \n", + "A house or bungalow | \n", + "[] | \n", + "3 | \n", + "4 | \n", + "[Husband, wife or partner, Son and/or daughter... | \n", + "... | \n", + "Yes | \n", + "Yes | \n", + "[Cat, Parrot] | \n", + "Other | \n", + "No | \n", + "Yes | \n", + "Combat support soldier | \n", + "2 | \n", + "0 | \n", + "initial_ukbb_survey | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "No | \n", + "8537213 | \n", + "NaN | \n", + "No | \n", + "13821939 | \n", + "A house or bungalow | \n", + "[] | \n", + "8 | \n", + "6 | \n", + "[Husband, wife or partner, Son and/or daughter... | \n", + "... | \n", + "Yes | \n", + "No | \n", + "[Parrot] | \n", + "Other | \n", + "No | \n", + "Yes | \n", + "Combat soldier | \n", + "2 | \n", + "0 | \n", + "initial_ukbb_survey | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "No | \n", + "0 | \n", + "NaN | \n", + "No | \n", + "0 | \n", + "A flat, maisonette or apartment | \n", + "[] | \n", + "16 | \n", + "4 | \n", + "[Husband, wife or partner, Son and/or daughter... | \n", + "... | \n", + "No | \n", + "No | \n", + "[Parrot] | \n", + "City | \n", + "No | \n", + "Yes | \n", + "Combat soldier | \n", + "2 | \n", + "0 | \n", + "initial_ukbb_survey | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "A flat, maisonette or apartment | \n", + "[] | \n", + "16 | \n", + "0 | \n", + "[Son and/or daughter (include step-children)] | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "[Cat] | \n", + "Other | \n", + "NaN | \n", + "Alternative service | \n", + "NaN | \n", + "22 | \n", + "0 | \n", + "<NA> | \n", + "
5 rows × 36 columns
\n", + "| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "array | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| DOB | \n", + "53 | \n", + "initial_medical | \n", + "DOB | \n", + "sociodemographics/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Birth year | \n", + "Integer | \n", + "int | \n", + "Accruing | \n", + "year | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "Single | \n", + "
| year_of_aliya | \n", + "53 | \n", + "initial_medical | \n", + "Year of aliya | \n", + "sociodemographics/initial_medical.parquet | \n", + "NaN | \n", + "NaN | \n", + "Year of aliyah to Israel | \n", + "Integer | \n", + "int | \n", + "Accruing | \n", + "year | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "2/26/2020 | \n", + "NaN | \n", + "NaN | \n", + "Single | \n", + "
| study_family_member_participant_id | \n", + "53 | \n", + "ukbb | \n", + "Family member participant ID | \n", + "sociodemographics/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "What is their participant ID? | \n", + "Integer | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "Single | \n", + "
| study_household_member_participant_id | \n", + "53 | \n", + "ukbb | \n", + "Household member participate ID | \n", + "sociodemographics/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "What are their participant ID? | \n", + "Integer | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "Single | \n", + "
| domestic_household_years | \n", + "53 | \n", + "ukbb | \n", + "Length of time at current address | \n", + "sociodemographics/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "How many years have you lived at your current ... | \n", + "Integer | \n", + "int | \n", + "Accruing | \n", + "Years | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "Single | \n", + "
| \n", + " | \n", + " | \n", + " | domestic_job_years | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "54.447672 | \n", + "Female | \n", + "
| 5027574288 | \n", + "10k | \n", + "0 | \n", + "3 | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "0 | \n", + "22 | \n", + "45.892093 | \n", + "Male | \n", + "
| 1178277844 | \n", + "10k | \n", + "0 | \n", + "8 | \n", + "44.435100 | \n", + "Female | \n", + "
| 1622660825 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "44.621536 | \n", + "Male | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Collection time | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Datetime | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| collection_date | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Collection date | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "Collection date | \n", + "Date | \n", + "Single | \n", + "datetime64[ns] | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Timezone | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "Categorical (single) | \n", + "Single | \n", + "category | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| data_source | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Data source | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "Data source of survey information | \n", + "Text | \n", + "Single | \n", + "string | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Auxiliary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| activity_walking_10min_days_weekly | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Number of days/week walked 10+ minutes | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "In a typical WEEK, on how many days did you wa... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Days/Week | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | collection_timestamp | \n", + "collection_date | \n", + "timezone | \n", + "data_source | \n", + "activity_walking_10min_days_weekly | \n", + "activity_walking_minutes_daily | \n", + "activity_moderate_days_weekly | \n", + "activity_moderate_minutes_daily | \n", + "activity_vigorous_days_weekly | \n", + "activity_vigorous_minutes_daily | \n", + "... | \n", + "extra_diet_press_oil_type | \n", + "extra_diet_main_dairy_source | \n", + "extra_diet_cheese_fat_percentage | \n", + "extra_diet_moldy_cheese_frequency | \n", + "extra_diet_cereal_sugared | \n", + "skin_color | \n", + "skin_ease_of_burn | \n", + "skin_past_sunburns | \n", + "hair_color | \n", + "activiy_indoors_pc_daily | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2022-08-02 09:32:01.373358080 | \n", + "2022-10-27 17:21:28.801640960 | \n", + "asia/jerusalem | \n", + "follow_up_ukbb_survey | \n", + "5 | \n", + "22 | \n", + "2 | \n", + "25 | \n", + "0 | \n", + "32 | \n", + "... | \n", + "[] | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2023-01-23 04:30:06.857399296 | \n", + "2023-05-09 07:50:09.348581376 | \n", + "asia/jerusalem | \n", + "follow_up_ukbb_survey | \n", + "7 | \n", + "10 | \n", + "1 | \n", + "21 | \n", + "0 | \n", + "6 | \n", + "... | \n", + "[Refined oil] | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2021-06-12 20:58:43.712332800 | \n", + "2020-04-18 19:37:33.439312640 | \n", + "asia/jerusalem | \n", + "initial_ukbb_survey | \n", + "5 | \n", + "0 | \n", + "0 | \n", + "21 | \n", + "0 | \n", + "0 | \n", + "... | \n", + "[Cold pressed olive oil, Refined oil, Oil - un... | \n", + "Beef | \n", + "9% fat or less cheese | \n", + "Once every few months | \n", + "Do not eat | \n", + "Fair | \n", + "Get moderately tanned | \n", + "2 | \n", + "Light brown | \n", + "0 | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2022-12-14 07:48:11.993735936 | \n", + "2023-05-17 00:00:00.000000000 | \n", + "asia/jerusalem | \n", + "initial_ukbb_survey | \n", + "5 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "0 | \n", + "... | \n", + "[Cold pressed olive oil, Refined oil, Oil - un... | \n", + "Beef | \n", + "Fat cheese | \n", + "Once every few months | \n", + "Do not eat | \n", + "Fair | \n", + "Never tan, only burn | \n", + "0 | \n", + "Dark brown | \n", + "0 | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2021-06-17 19:35:15.170488064 | \n", + "2021-12-27 13:58:43.397170688 | \n", + "asia/jerusalem | \n", + "follow_up_ukbb_survey | \n", + "1 | \n", + "6 | \n", + "0 | \n", + "78 | \n", + "0 | \n", + "3 | \n", + "... | \n", + "[Refined oil] | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "0 | \n", + "NaN | \n", + "0 | \n", + "
5 rows × 159 columns
\n", + "| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| activity_walking_10min_days_weekly | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Number of days/week walked 10+ minutes | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "In a typical WEEK, on how many days did you wa... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Days/Week | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| activity_walking_minutes_daily | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Duration of walks | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "How many minutes did you usually spend walking... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Minutes/Day | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| activity_moderate_days_weekly | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Number of days/week of moderate physical activ... | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "In a typical WEEK, on how many days did you do... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Days/Week | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| activity_moderate_minutes_daily | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Duration of moderate activity | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "How many minutes did you usually spend doing m... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Minutes/Day | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| activity_vigorous_days_weekly | \n", + "55 | \n", + "lifestyle_and_environment | \n", + "Number of days/week of vigorous physical activ... | \n", + "lifestyle_and_environment/lifestyle_and_enviro... | \n", + "NaN | \n", + "NaN | \n", + "In a typical WEEK, how many days did you do 10... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Days/Week | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | activity_walking_minutes_daily | \n", + "age | \n", + "sex | \n", + "collection_date | \n", + "
|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "22 | \n", + "54.447672 | \n", + "Female | \n", + "2022-10-27 17:21:28.801640960 | \n", + "
| 5027574288 | \n", + "10k | \n", + "0 | \n", + "10 | \n", + "54.169913 | \n", + "Male | \n", + "2023-05-09 07:50:09.348581376 | \n", + "
| 7783260382 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "45.892093 | \n", + "Male | \n", + "2020-04-18 19:37:33.439312640 | \n", + "
| 1178277844 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "44.435100 | \n", + "Female | \n", + "2023-05-17 00:00:00.000000000 | \n", + "
| 1622660825 | \n", + "10k | \n", + "0 | \n", + "6 | \n", + "44.621536 | \n", + "Male | \n", + "2021-12-27 13:58:43.397170688 | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| activity_social_visit_frequency | \n", + "57 | \n", + "psychological_and_social_health | \n", + "Frequency of friend/family visits | \n", + "psychological_and_social_health/psychological_... | \n", + "NaN | \n", + "NaN | \n", + "How often do you visit friends or family or ha... | \n", + "Categorical (single) | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "100327 | \n", + "
| activity_social_weekly | \n", + "57 | \n", + "psychological_and_social_health | \n", + "Leisure/social activities | \n", + "psychological_and_social_health/psychological_... | \n", + "NaN | \n", + "NaN | \n", + "Which of the following do you attend once a we... | \n", + "Categorical (multiple) | \n", + "Multiple | \n", + "object | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "100328 | \n", + "
| health_mental_current_mood_swings_frequency | \n", + "57 | \n", + "psychological_and_social_health | \n", + "Mood swings | \n", + "psychological_and_social_health/psychological_... | \n", + "NaN | \n", + "NaN | \n", + "Does your mood often go up and down? | \n", + "Categorical (single) | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "100349 | \n", + "
| health_mental_current_miserable | \n", + "57 | \n", + "psychological_and_social_health | \n", + "Miserableness | \n", + "psychological_and_social_health/psychological_... | \n", + "NaN | \n", + "NaN | \n", + "Do you ever feel 'just miserable' for no reason? | \n", + "Categorical (single) | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "100349 | \n", + "
| health_mental_current_irritable | \n", + "57 | \n", + "psychological_and_social_health | \n", + "Irritability | \n", + "psychological_and_social_health/psychological_... | \n", + "NaN | \n", + "NaN | \n", + "Are you an irritable person? | \n", + "Categorical (single) | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "100349 | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | activity_social_visit_frequency | \n", + "activity_social_weekly | \n", + "health_mental_current_mood_swings_frequency | \n", + "health_mental_current_miserable | \n", + "health_mental_current_irritable | \n", + "health_mental_current_sensitive | \n", + "health_mental_current_fed_up | \n", + "health_mental_current_nervous | \n", + "health_mental_current_worrier | \n", + "health_mental_current_tense | \n", + "... | \n", + "health_mental_past_irritable_two_days | \n", + "health_mental_past_manic_symptoms | \n", + "health_mental_past_manic_irritable_longest | \n", + "health_mental_past_manic_irritable_problems | \n", + "health_mental_current_able_to_confide | \n", + "health_mental_past_two_years_event | \n", + "collection_timestamp | \n", + "collection_date | \n", + "timezone | \n", + "data_source | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "About once a week | \n", + "[Sports club or gym, None of the above] | \n", + "No | \n", + "No | \n", + "No | \n", + "Yes | \n", + "Yes | \n", + "No | \n", + "Yes | \n", + "Yes | \n", + "... | \n", + "Do not know | \n", + "NaN | \n", + "At least two days, but less than a week | \n", + "NaN | \n", + "About once a week | \n", + "[Serious illness, injury or assault of a close... | \n", + "2022-11-05 00:26:58.116574464 | \n", + "2022-10-17 16:01:20.824883712 | \n", + "asia/jerusalem | \n", + "follow_up_ukbb_survey | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "About once a month | \n", + "[Sports club or gym, Other group activity] | \n", + "Yes | \n", + "Yes | \n", + "No | \n", + "No | \n", + "Yes | \n", + "No | \n", + "No | \n", + "No | \n", + "... | \n", + "Yes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Almost daily | \n", + "[None of the above] | \n", + "2020-02-07 04:11:50.776566784 | \n", + "2020-03-23 19:28:19.985250304 | \n", + "asia/jerusalem | \n", + "initial_ukbb_survey | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "About once a month | \n", + "[None of the above] | \n", + "Yes | \n", + "Yes | \n", + "Yes | \n", + "Yes | \n", + "Yes | \n", + "Yes | \n", + "Yes | \n", + "Yes | \n", + "... | \n", + "No | \n", + "NaN | \n", + "At least two days, but less than a week | \n", + "NaN | \n", + "Never or almost never | \n", + "[Financial difficulties] | \n", + "2022-12-28 08:00:06.452548096 | \n", + "2023-01-09 12:38:24.150213376 | \n", + "asia/jerusalem | \n", + "initial_ukbb_survey | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "2-4 times a week | \n", + "[Religious group, Adult education class] | \n", + "No | \n", + "No | \n", + "No | \n", + "No | \n", + "No | \n", + "Do not know | \n", + "Yes | \n", + "No | \n", + "... | \n", + "Do not know | \n", + "None of the above | \n", + "A week or more | \n", + "NaN | \n", + "Never or almost never | \n", + "[Marital separation/divorce] | \n", + "2023-03-03 06:20:48.832640000 | \n", + "2023-02-09 05:22:46.969990656 | \n", + "asia/jerusalem | \n", + "initial_ukbb_survey | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "About once a month | \n", + "[Adult education class] | \n", + "Yes | \n", + "Yes | \n", + "Yes | \n", + "No | \n", + "Yes | \n", + "Yes | \n", + "Yes | \n", + "Yes | \n", + "... | \n", + "Yes | \n", + "NaN | \n", + "A week or more | \n", + "NaN | \n", + "About once a week | \n", + "[None of the above] | \n", + "2021-12-07 07:01:14.933780480 | \n", + "2022-01-20 16:56:12.083890688 | \n", + "asia/jerusalem | \n", + "follow_up_ukbb_survey | \n", + "
5 rows × 44 columns
\n", + "| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| health_mental_past_depression_longest | \n", + "57 | \n", + "psychological_and_social_health | \n", + "Longest period of depression | \n", + "psychological_and_social_health/psychological_... | \n", + "NaN | \n", + "NaN | \n", + "How many weeks was the longest period when you... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| health_mental_past_depression_episodes_number | \n", + "57 | \n", + "psychological_and_social_health | \n", + "Number of depression episodes | \n", + "psychological_and_social_health/psychological_... | \n", + "NaN | \n", + "NaN | \n", + "How many periods have you had when you were fe... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| health_mental_past_disinterest_longest | \n", + "57 | \n", + "psychological_and_social_health | \n", + "Longest period of unenthusiasm / disinterest | \n", + "psychological_and_social_health/psychological_... | \n", + "NaN | \n", + "NaN | \n", + "How many weeks was the longest period when you... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| health_mental_past_disinterest_episodes_number | \n", + "57 | \n", + "psychological_and_social_health | \n", + "Number of unenthusiastic/disinterested episodes | \n", + "psychological_and_social_health/psychological_... | \n", + "NaN | \n", + "NaN | \n", + "How many periods have you had when you were un... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | health_mental_past_depression_episodes_number | \n", + "age | \n", + "sex | \n", + "collection_date | \n", + "
|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "54.447672 | \n", + "Female | \n", + "2022-10-17 16:01:20.824883712 | \n", + "
| 5027574288 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "54.169913 | \n", + "Male | \n", + "2020-03-23 19:28:19.985250304 | \n", + "
| 7783260382 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "45.892093 | \n", + "Male | \n", + "2023-01-09 12:38:24.150213376 | \n", + "
| 1178277844 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "44.435100 | \n", + "Female | \n", + "2023-02-09 05:22:46.969990656 | \n", + "
| 1622660825 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "44.621536 | \n", + "Male | \n", + "2022-01-20 16:56:12.083890688 | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| collection_timestamp | \n", + "58 | \n", + "ukbb | \n", + "Collection timestamp | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "Collection timestamp | \n", + "Datetime | \n", + "Single | \n", + "datetime64[ns, Asia/Jerusalem] | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| collection_date | \n", + "58 | \n", + "ukbb | \n", + "Collection date | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "Collection date | \n", + "Date | \n", + "Single | \n", + "datetime64[ns] | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| timezone | \n", + "58 | \n", + "ukbb | \n", + "Timezone | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "Text | \n", + "Single | \n", + "category | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Collection time | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| health_general_rating | \n", + "58 | \n", + "ukbb | \n", + "Overall health rating | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "In general how would you rate your overall hea... | \n", + "Categorical (single) | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "100508 | \n", + "
| health_general_dissability_illness | \n", + "58 | \n", + "ukbb | \n", + "Long-standing illness, disability or infirmity | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "Do you have any long-standing illness, disabil... | \n", + "Categorical (single) | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "NaN | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "100349 | \n", + "
| \n", + " | \n", + " | \n", + " | \n", + " | oralheatlh_bleeding_gums | \n", + "oralheatlh_abscess_or_gingivitis | \n", + "oralheatlh_antibiotics_for_gingivitis | \n", + "oralheatlh_bad_breath | \n", + "oralheatlh_teeth_mobility_lately | \n", + "eye_health_eyeglasses_age | \n", + "eye_health_decreased_eyesight_age | \n", + "eye_health_ona_age | \n", + "eye_health_conjunctivitis_age | \n", + "eye_health_surgery_improve_vision_age | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "Often | \n", + "Rarely | \n", + "Never | \n", + "Do not have bad breath | \n", + "No | \n", + "14.831559 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "-1499.006824 | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "No | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Slight mobility in a small number of teeth | \n", + "14.852326 | \n", + "-1499.753959 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "Rarely | \n", + "Never | \n", + "Never | \n", + "Do not know | \n", + "No | \n", + "-1498.691747 | \n", + "NaN | \n", + "NaN | \n", + "-1499.592424 | \n", + "27.904999 | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "-1499.986679 | \n", + "NaN | \n", + "
| \n", + " | code_number | \n", + "coding | \n", + "english | \n", + "hebrew | \n", + "answer_field_name | \n", + "sexed | \n", + "ukbb_compatible | \n", + "ukbb_similar_coding | \n", + "scripting_instruction | \n", + "description | \n", + "notes | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| 0 | \n", + "001_03 | \n", + "0 | \n", + "asia/jerusalem | \n", + "זמן ישראל | \n", + "NaN | \n", + "NaN | \n", + "False | \n", + "NaN | \n", + "NaN | \n", + "Timezone | \n", + "NaN | \n", + "
| 1 | \n", + "062_02 | \n", + "1 | \n", + "BRCA-1 | \n", + "BRCA-1 | \n", + "brca_type_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 2 | \n", + "062_02 | \n", + "2 | \n", + "BRCA-2 | \n", + "BRCA-2 | \n", + "brca_type_2 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 3 | \n", + "062_02 | \n", + "-1 | \n", + "Do not know | \n", + "לא יודע/ת | \n", + "brca_type_3 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NMUL | \n", + "NaN | \n", + "NaN | \n", + "
| 4 | \n", + "062_03 | \n", + "1 | \n", + "A relative of mine got breast, ovarian, or pro... | \n", + "קרוב/ת משפחה חלה/תה בסרטן השד, השחלה, או הערמו... | \n", + "brca_indication_1 | \n", + "Both sexes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | folder_id | \n", + "feature_set | \n", + "field_string | \n", + "relative_location | \n", + "bulk_file_extension | \n", + "bulk_dictionary | \n", + "description_string | \n", + "field_type | \n", + "array | \n", + "pandas_dtype | \n", + "stability | \n", + "units | \n", + "sampling_rate | \n", + "strata | \n", + "sexed | \n", + "debut | \n", + "completed | \n", + "data_coding | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| health_eyes_glasses_contacts_start_age | \n", + "58 | \n", + "ukbb | \n", + "Age started wearing glasses or contact lenses | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "What age did you first start to wear glasses o... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Years | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| health_eyes_diabetes_eye_start_age | \n", + "58 | \n", + "ukbb | \n", + "Age when diabetes-related eye disease diagnosed | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "What was your age when diabetes related eye di... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Years | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| health_eyes_glaucoma_eye_start_age | \n", + "58 | \n", + "ukbb | \n", + "Age glaucoma diagnosed | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "What was your age when glaucoma was first diag... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Years | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| health_eyes_injury_trauma_eye_start_age | \n", + "58 | \n", + "ukbb | \n", + "Age when loss of vision due to injury or traum... | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "What was your age when injury or trauma result... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Years | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| health_eyes_cataract_eye_start_age | \n", + "58 | \n", + "ukbb | \n", + "Age cataract diagnosed | \n", + "health_and_medical_history/ukbb.parquet | \n", + "NaN | \n", + "NaN | \n", + "What was your age when a cataract was first di... | \n", + "Integer | \n", + "Single | \n", + "int | \n", + "Accruing | \n", + "Years | \n", + "NaN | \n", + "Primary | \n", + "Both sexes | \n", + "1/9/2019 | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | health_eyes_glasses_contacts_start_age | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "array_index | \n", + "\n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "0 | \n", + "16 | \n", + "54.447672 | \n", + "Female | \n", + "
| 5027574288 | \n", + "10k | \n", + "0 | \n", + "15 | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "0 | \n", + "4 | \n", + "45.892093 | \n", + "Male | \n", + "
| 1178277844 | \n", + "10k | \n", + "0 | \n", + "0 | \n", + "44.435100 | \n", + "Female | \n", + "
| 1622660825 | \n", + "10k | \n", + "0 | \n", + "3 | \n", + "44.621536 | \n", + "Male | \n", + "
| \n", + " | feature_set | \n", + "relative_location | \n", + "
|---|---|---|
| tabular_field_name | \n", + "\n", + " | \n", + " |
| menopause__curated_phenotype | \n", + "menopause | \n", + "curated_phenotypes/menopause.parquet | \n", + "
| osteoporosis__curated_phenotype | \n", + "osteoporosis | \n", + "curated_phenotypes/osteoporosis.parquet | \n", + "
| migraine__curated_phenotype | \n", + "migraine | \n", + "curated_phenotypes/migraine.parquet | \n", + "
| depression__curated_phenotype | \n", + "depression | \n", + "curated_phenotypes/depression.parquet | \n", + "
| adhd__curated_phenotype | \n", + "adhd | \n", + "curated_phenotypes/adhd.parquet | \n", + "
| anxiety__self_reported_anxiety | \n", + "anxiety | \n", + "curated_phenotypes/anxiety.parquet | \n", + "
| abdominal_adiposity__curated_phenotype | \n", + "abdominal_adiposity | \n", + "curated_phenotypes/abdominal_adiposity.parquet | \n", + "
| bmi__curated_phenotype | \n", + "bmi | \n", + "curated_phenotypes/bmi.parquet | \n", + "
| osa__curated_phenotype | \n", + "osa | \n", + "curated_phenotypes/osa.parquet | \n", + "
| ckd__egfr | \n", + "ckd | \n", + "curated_phenotypes/ckd.parquet | \n", + "
| mafld__self_reporting | \n", + "mafld | \n", + "curated_phenotypes/mafld.parquet | \n", + "
| diabetes__self_reported_diabetic | \n", + "diabetes | \n", + "curated_phenotypes/diabetes.parquet | \n", + "
| ischemic_heart_disease__curated_phenotype | \n", + "ischemic_heart_disease | \n", + "curated_phenotypes/ischemic_heart_disease.parquet | \n", + "
| sleep_quality__curated_phenotype | \n", + "sleep_quality | \n", + "curated_phenotypes/sleep_quality.parquet | \n", + "
| hypertension__curated_phenotype | \n", + "hypertension | \n", + "curated_phenotypes/hypertension.parquet | \n", + "
| hyperlipidemia__curated_phenotype | \n", + "hyperlipidemia | \n", + "curated_phenotypes/hyperlipidemia.parquet | \n", + "
| nmsc__curated_phenotype | \n", + "nmsc | \n", + "curated_phenotypes/nmsc.parquet | \n", + "
| endometriosis__curated_phenotype | \n", + "endometriosis | \n", + "curated_phenotypes/endometriosis.parquet | \n", + "
| \n", + " | \n", + " | \n", + " | abdominal_adiposity__curated_phenotype | \n", + "abdominal_adiposity__total_scan_sat_mass | \n", + "abdominal_adiposity__total_scan_vat_mass | \n", + "abdominal_adiposity__vat_index | \n", + "abdominal_adiposity__vat_sat_ratio | \n", + "abdominal_adiposity__visceral_adipose_index | \n", + "abdominal_adiposity__waist_circumference | \n", + "abdominal_adiposity__waist_to_hip_ratio | \n", + "adhd__any_ADHD_medication | \n", + "adhd__curated_phenotype | \n", + "... | \n", + "sleep_quality__sleep_index_lowrisk_daytime | \n", + "sleep_quality__sleep_index_lowrisk_hours_daily | \n", + "sleep_quality__sleep_index_lowrisk_insomnia | \n", + "sleep_quality__sleep_index_lowrisk_snoring | \n", + "sleep_quality__sleep_index_lowrisk_waking_morning_easy | \n", + "sleep_quality__sleep_latency | \n", + "sleep_quality__total_sleep_time | \n", + "sleep_quality__total_wake_time_after_sleep_onset | \n", + "age | \n", + "sex | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "high abdominal adiposity risk | \n", + "191.146850 | \n", + "1102.824186 | \n", + "60.800281 | \n", + "17.140045 | \n", + "34.752193 | \n", + "132.000000 | \n", + "-24.213366 | \n", + "NaN | \n", + "No ADHD | \n", + "... | \n", + "1.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "295.004051 | \n", + "19687.326581 | \n", + "1601.416481 | \n", + "54.447672 | \n", + "Female | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "283.204697 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "No ADHD | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "0.0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "54.169913 | \n", + "Male | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "45.892093 | \n", + "Male | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "... | \n", + "1.0 | \n", + "0.0 | \n", + "0.0 | \n", + "0.0 | \n", + "1.0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "44.435100 | \n", + "Female | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "intermediate abdominal adiposity risk | \n", + "711.160472 | \n", + "2292.453235 | \n", + "55.097244 | \n", + "-42.305443 | \n", + "16.686102 | \n", + "97.055659 | \n", + "-7.305395 | \n", + "NaN | \n", + "No ADHD | \n", + "... | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "1.0 | \n", + "301.336821 | \n", + "NaN | \n", + "736.147814 | \n", + "44.621536 | \n", + "Male | \n", + "
5 rows × 160 columns
\n", + "| \n", + " | \n", + " | \n", + " | diabetes__self_reported_diabetic | \n", + "diabetes__self_reported_prediabetic | \n", + "diabetes__curated_phenotype | \n", + "diabetes__bloodtest_hba1c | \n", + "diabetes__bloodtest_fpg | \n", + "diabetes__cgm_ea1c | \n", + "diabetes__cgm_hbgi | \n", + "diabetes__cgm_mage | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "non-diabetes | \n", + "NaN | \n", + "170.947783 | \n", + "9.799652 | \n", + "-32.430445 | \n", + "54.663207 | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "non-diabetes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "non-diabetes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "non-diabetes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "non-diabetes | \n", + "NaN | \n", + "118.209838 | \n", + "NaN | \n", + "5.600993 | \n", + "30.235100 | \n", + "
| \n", + " | diabetes__bloodtest_hba1c | \n", + "diabetes__curated_phenotype | \n", + "diabetes__self_reported_diabetic | \n", + "
|---|---|---|---|
| field_string | \n", + "diabetes__bloodtest_hba1c | \n", + "diabetes__curated_phenotype | \n", + "diabetes__self_reported_diabetes | \n", + "
| description_string | \n", + "HbA1c blood test | \n", + "Curated diabetes category | \n", + "Self-reported diabetes | \n", + "
| customer_field | \n", + "ready | \n", + "ready | \n", + "ready | \n", + "
| folder_id | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| feature_set | \n", + "diabetes | \n", + "diabetes | \n", + "diabetes | \n", + "
| field_type | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| strata | \n", + "Supporting | \n", + "Primary | \n", + "Primary | \n", + "
| data_coding | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| array | \n", + "Single | \n", + "Single | \n", + "Single | \n", + "
| pandas_dtype | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| bulk_file_extension | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| relative_location | \n", + "curated_phenotypes/diabetes.parquet | \n", + "curated_phenotypes/diabetes.parquet | \n", + "curated_phenotypes/diabetes.parquet | \n", + "
| is_big_data | \n", + "False | \n", + "False | \n", + "False | \n", + "
| old_data_loader | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| old_lab_data_column_name | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| dev_notes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| min_plausible_value | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| max_plausible_value | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| dependency | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| sensitive_data_flag | \n", + "False | \n", + "False | \n", + "False | \n", + "
| sensitive_notes | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| units | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| bulk_dictionary | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| sampling_rate | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| transformation | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| ukbb_compatible | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| ukbb_field_id | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| list_of_tags | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| stability | \n", + "Ongoing | \n", + "Ongoing | \n", + "Ongoing | \n", + "
| sexed | \n", + "Both sexes | \n", + "Both sexes | \n", + "Both sexes | \n", + "
| debut | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| completed | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| count | \n", + "60.0 | \n", + "599 | \n", + "1.0 | \n", + "
| unique | \n", + "24.0 | \n", + "4 | \n", + "1.0 | \n", + "
| most_frequent | \n", + "9.9 | \n", + "non-diabetes | \n", + "1.0 | \n", + "
| min | \n", + "-53.371005 | \n", + "NaN | \n", + "1.0 | \n", + "
| max | \n", + "9.9 | \n", + "NaN | \n", + "1.0 | \n", + "
| mean | \n", + "0.385633 | \n", + "NaN | \n", + "1.0 | \n", + "
| median | \n", + "9.9 | \n", + "NaN | \n", + "1.0 | \n", + "
| std | \n", + "15.88666 | \n", + "NaN | \n", + "NaN | \n", + "
| \n", + " | \n", + " | \n", + " | hypertension__curated_phenotype | \n", + "hypertension__self_reported_hypertension | \n", + "hypertension__sitting_blood_pressure_systolic | \n", + "hypertension__sitting_blood_pressure_diastolic | \n", + "hypertension__lying_blood_pressure_systolic | \n", + "hypertension__lying_blood_pressure_diastolic | \n", + "hypertension__l_brachial_pressure | \n", + "hypertension__r_brachial_pressure | \n", + "hypertension__acc_aha_ranges | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "Non hypertensive | \n", + "0.0 | \n", + "197.000000 | \n", + "116.731813 | \n", + "110.866982 | \n", + "38.933207 | \n", + "-6.315214 | \n", + "222.000000 | \n", + "Stage 1 | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "0.0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "0.0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Normal | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "0.0 | \n", + "117.447938 | \n", + "97.501058 | \n", + "106.780079 | \n", + "33.736837 | \n", + "94.510480 | \n", + "180.325005 | \n", + "Elevated | \n", + "
| \n", + " | \n", + " | \n", + " | hyperlipidemia__curated_phenotype | \n", + "hyperlipidemia__hypertriglyceridemia | \n", + "hyperlipidemia__hyperlipoproteinemia | \n", + "hyperlipidemia__combined_hyperlipoproteinemia | \n", + "hyperlipidemia__self_reported_hypertriglyceridemia | \n", + "hyperlipidemia__self_reported_hyperlipoproteinemia | \n", + "hyperlipidemia__ldl_value | \n", + "hyperlipidemia__ldl_category | \n", + "hyperlipidemia__nightingale_ldl_value | \n", + "hyperlipidemia__total_cholesterol_value | \n", + "hyperlipidemia__total_cholesterol_category | \n", + "hyperlipidemia__triglycerides_value | \n", + "hyperlipidemia__triglycerides_category | \n", + "hyperlipidemia__nightingale_triglycerides_value | \n", + "hyperlipidemia__cholesterol_tg_ratio_value | \n", + "hyperlipidemia__cholesterol_tg_ratio_category | \n", + "hyperlipidemia__hdl_value | \n", + "hyperlipidemia__hdl_category | \n", + "hyperlipidemia__nightingale_hdl_value | \n", + "
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| participant_id | \n", + "cohort | \n", + "research_stage | \n", + "\n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " | \n", + " |
| 5516424321 | \n", + "10k | \n", + "00_00_visit | \n", + "see hyperlipoproteinemia, hypertriglyceridemia | \n", + "Normal Triglycerides | \n", + "High Cholesterol Values | \n", + "False | \n", + "0.0 | \n", + "0.0 | \n", + "86.397922 | \n", + "Borderline high | \n", + "NaN | \n", + "378.263711 | \n", + "Desirable | \n", + "-1.094773 | \n", + "Normal | \n", + "NaN | \n", + "6.465116 | \n", + "Normal | \n", + "76.689152 | \n", + "Normal | \n", + "NaN | \n", + "
| 5027574288 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 7783260382 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 1178277844 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "None | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "
| 1622660825 | \n", + "10k | \n", + "00_00_visit | \n", + "NaN | \n", + "NaN | \n", + "High Cholesterol Values | \n", + "None | \n", + "0.0 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "-351.272671 | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "Normal | \n", + "NaN | \n", + "NaN | \n", + "NaN | \n", + "