Hi, I have used vamb 5.0.4 to generate the binning result and trying to abundance estimation using the abundance.npz. If I read in the abundance matrix, I do not really know what are the rownames. And the abundance matrix has the shape of (contig_number,sample_number)， Should I use composition.metadata.identifiers, the vae_cluster_unsplit.tsv, or vae_cluster_split.tsv to assign them with the rownames, as they have same length? but which one to use?
import vamb composition = vamb.parsecontigs.Composition.load("composition.npz") abundance = vamb.parsebam.Abundance.load("abundance.npz", composition.metadata.refhash)
Thanks,
Jingxian
Hi, I have used vamb 5.0.4 to generate the binning result and trying to abundance estimation using the abundance.npz. If I read in the abundance matrix, I do not really know what are the rownames. And the abundance matrix has the shape of (contig_number,sample_number)， Should I use composition.metadata.identifiers, the vae_cluster_unsplit.tsv, or vae_cluster_split.tsv to assign them with the rownames, as they have same length? but which one to use?
import vamb composition = vamb.parsecontigs.Composition.load("composition.npz") abundance = vamb.parsebam.Abundance.load("abundance.npz", composition.metadata.refhash)Thanks,
Jingxian