This is a partial copy from the original repository, made for the Hackathon.
We kept all the repository the same, except the script folder. There you find only the script 1a_CatFoodExp2021_analysis_fitness.R which is our focus in the hackathon.
This folder contains all the scripts needed to reproduce the analysis of experimental and field winter moth data belonging to manuscript Phenological mismatch affects individual fitness and population growth in the winter moth, published in Proc Roy Soc B: https://doi.org/10.1098/rspb.2023.0414
NB: The raw data, including both experimental data and field data, can be found on Dryad https://doi.org/10.5061/dryad.m905qfv5p
Natalie E. van Dis, ORCID ID: 0000-0002-9934-6751
R scripts to reproduce the analysis and visualization (incl. manuscript figures) of the 2021 winter moth caterpillar feeding experiment:
(1) What are the fitness consequences of day to day timing (a)synchrony with budburst?
(2) Can food quality affect the timing of life stages?
Supplemental: Is pupation weight a good proxy for fecundity?
See _src/env_CatFoodExp2021_analysis.txt for used R package versions.
R script to get trapping effort descriptives and to prep all the field data for analysis.
R script to reproduce the manuscript figure that visualizes winter moth population dynamics and population phenological mismatch over time (1993-2021) at four locations in the Netherlands.
R script to reproduce the analysis of winter moth population dynamics: how much variation in population growth can be explained by timing mismatch?
See _src/env_PopDyn_analysis.txt for used R package versions.