It'd be preferred to be able to run the tool outside of the install directory. Ie:
python ~/bin/StrVCTVRE.py -i input.vcf.gz -o output.vcf.gz -f vcf -p /path/to/hg38.phyloP100way.bw
The workaround I've found is to just softlink everything from the install dir to the current dir, but that's not ideal.
This is the error I get when trying to run outside of the install dir
ValueError: File "data/exons_Appris_featurized_transcript_Chr1-Y_loeuf.sorted.bed" does not exist
Thanks!
It'd be preferred to be able to run the tool outside of the install directory. Ie:
python ~/bin/StrVCTVRE.py -i input.vcf.gz -o output.vcf.gz -f vcf -p /path/to/hg38.phyloP100way.bwThe workaround I've found is to just softlink everything from the install dir to the current dir, but that's not ideal.
This is the error I get when trying to run outside of the install dir
Thanks!