Hello, thank you for providing such a useful software.
Can I use sim3C to generate hic data that is disconnected according to the restriction site? Instead of 150bp data with regular R1 and R2?
I can generate 150bp hic simulation data using the following code . Do you know how to adjust it?
sim3C --profile mycom.txt -n 5000000 -l 150 -e DpnII -m hic /home/work/jialu/tetraploid_assembly/simulate_data/strain_fq/ref_genome/hap1.fa hap1_R1.fq hap1_R2.fq
Looking forward to your reply！
Hello, thank you for providing such a useful software.
Can I use sim3C to generate hic data that is disconnected according to the restriction site? Instead of 150bp data with regular R1 and R2?
I can generate 150bp hic simulation data using the following code . Do you know how to adjust it?
sim3C --profile mycom.txt -n 5000000 -l 150 -e DpnII -m hic /home/work/jialu/tetraploid_assembly/simulate_data/strain_fq/ref_genome/hap1.fa hap1_R1.fq hap1_R2.fqLooking forward to your reply！