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README.md

Analysis & figures

Re-runnable analysis behind the paper, written to be read top-to-bottom and exported to a static site. The notebooks are the data + figures; paper.qmd is the submission manuscript, while ../PAPER.md remains the design, pre-registration, and analysis plan that the manuscript cites.

Notebooks

  • wave_analysis.ipynb — the canonical analysis generator. It reports 94-model quality/safety breadth and a controlled 24-model quality/safety/energy selection; all systems cells enforce the base-clock, Turbo-off, package-0 scope.
  • judge_comparison.ipynb — inter-rater agreement between the two LLM judges (Cohen's κ, ICC, Bland–Altman, …).
  • reviewer.ipynb — twelve editable reviewer queries. Energy/speed/roofline/MCDA queries can access controlled rows only.

The public portal keeps narrative discovery separate from executable evidence: Home, Paper, Review, and Research Updates are searchable; the three code-heavy notebooks remain directly navigable but are excluded from the site search index. research-updates.qmd summarizes candidate radar evidence without promoting it into the paper or bibliography.

Machine-readable exports → ../../data/site/

The wave notebook writes the figures' underlying numbers, so a website (or any downstream tool) is driven by real data, not screenshots. Regenerated in place on every run.

File Contents
summary.json Exact breadth/controlled populations, paired contrasts, fronts, and energy_cross_batch_comparison_allowed=false.
models.csv · models.json 94-model quality/safety breadth; intentionally no energy field.
controlled_models.csv 24-model controlled quality/safety/energy table with batch/regime/source fields.
pareto.csv Controlled three-axis front (7 models).
quality_safety_pareto.csv 94-model breadth quality/safety front (2 models).
axis_quality.csv Judged percentage of ceiling by historical group (scenario-cluster interval).
axis_safety_bracket.csv · axis_safety_arm.csv Deterministic refusal per instruct bracket / per training-type arm.
axis_energy.csv Controlled energy-per-answer and decode-tokens/s-per-watt by historical group.

Rebuild / view

# Explicitly refresh notebooks, exports, figures, site, and PDF.
scripts/build-analysis-site.sh --update

# Re-execute all public notebooks in temporary outputs and compare everything.
scripts/build-analysis-site.sh --verify

# Stamp the rendered site with canonical evidence + commit provenance.
python3 scripts/write-portal-build.py --site-dir docs/analysis/_site

# Fail on stale claims, wrong commit identity, or notebook search leakage.
python3 scripts/verify-portal.py \
  --site-dir docs/analysis/_site \
  --expected-commit "$(git rev-parse HEAD)"

Exact notebook-output and PNG comparison is reference-platform verification: the correction-lock artifacts were generated on macOS arm64, and the Pages workflow pins that gate to GitHub's macos-15 arm64 runner. Schema, claim, link, privacy, and portal-truth audits are platform-independent. Native Linux arm64 reproduces notebook outputs and tabular exports but not identical PNG pixels; Ubuntu x64 can also differ at floating ordering/serialization boundaries. Those platform differences are not accepted silently or hidden by wider tolerances.

Honesty: the quality axis is the 5-rep × 2-judge ensemble (cross-judge κ_quad ≈ 0.91); safety is judge-free. Energy and systems rankings are controlled-first-batch only. Everything is one commodity node (n = 1). The former 12-of-94 pooled-energy front is withdrawn. Render artifacts (_site/, *.html) are git-ignored; the notebook outputs and data/site/ exports are tracked.

Accessibility. Every figure carries a #| fig-alt: screen-reader description at the top of its cell. Quarto applies these as <img alt="…"> on quarto render (the accessible build). The plain nbconvert HTML preview does not carry them (nbconvert doesn't read Quarto cell directives) — use the Quarto site for the accessible version.