Here's the command line i use:
racon -m 8 -x 6 -g -8 -w 500 -t 4 ../all_reads.fastq Sample_ref.sam ~/REFERENCES/reference.fasta > RACON/racon_ref_Sample.fasta
This is the error:
[racon::Polisher::initialize] loaded target sequences 10.810765 s
[racon::Polisher::initialize] loaded sequences 2.468961 s
[racon::Polisher::initialize] loaded overlaps 1.142807 s
[racon::Polisher::initialize] aligning overlaps [====================] 1.910425 s
Segmentation fault (core dumped)
I have 28 G free memory. and this my sam file size:
618033983 Jan 10 12:48 Sample_ref.sam
What is wrong and what should I do?
Here's the command line i use:
racon -m 8 -x 6 -g -8 -w 500 -t 4 ../all_reads.fastq Sample_ref.sam ~/REFERENCES/reference.fasta > RACON/racon_ref_Sample.fastaThis is the error:
I have 28 G free memory. and this my sam file size:
618033983 Jan 10 12:48 Sample_ref.samWhat is wrong and what should I do?