modules/modules at master · nvlachos/modules

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Name		Name	Last commit message	Last commit date
parent directory ..
abacas		abacas
abricate		abricate
adapterremoval		adapterremoval
adapterremovalfixprefix		adapterremovalfixprefix
agrvate		agrvate
allelecounter		allelecounter
amplify/predict		amplify/predict
amps		amps
amrfinderplus		amrfinderplus
antismash/antismashlitedownloaddatabases		antismash/antismashlitedownloaddatabases
arriba		arriba
artic		artic
ascat		ascat
assemblyscan		assemblyscan
ataqv/ataqv		ataqv/ataqv
bakta		bakta
bamaligncleaner		bamaligncleaner
bamcmp		bamcmp
bamtools		bamtools
bamutil/trimbam		bamutil/trimbam
bandage/image		bandage/image
bbmap		bbmap
bcftools		bcftools
bclconvert		bclconvert
bedtools		bedtools
biobambam		biobambam
biscuit		biscuit
bismark		bismark
blast		blast
bowtie		bowtie
bowtie2		bowtie2
bracken/bracken		bracken/bracken
bwa		bwa
bwamem2		bwamem2
bwameth		bwameth
cat		cat
cellranger		cellranger
centrifuge		centrifuge
checkm/lineagewf		checkm/lineagewf
chromap		chromap
clonalframeml		clonalframeml
cmseq/polymut		cmseq/polymut
cnvkit/batch		cnvkit/batch
cnvpytor		cnvpytor
controlfreec		controlfreec
cooler		cooler
csvtk		csvtk
custom		custom
cutadapt		cutadapt
damageprofiler		damageprofiler
dastool		dastool
dedup		dedup
deeparg		deeparg
deeptools		deeptools
deepvariant		deepvariant
delly/call		delly/call
diamond		diamond
dragmap		dragmap
dragonflye		dragonflye
dshbio		dshbio
ectyper		ectyper
elprep		elprep
emmtyper		emmtyper
ensemblvep		ensemblvep
expansionhunter		expansionhunter
faqcs		faqcs
fargene		fargene
fastani		fastani
fastp		fastp
fastqc		fastqc
fastqscan		fastqscan
fasttree		fasttree
fgbio		fgbio
filtlong		filtlong
flash		flash
freebayes		freebayes
gamma		gamma
gatk4		gatk4
genmap		genmap
genrich		genrich
gffread		gffread
glnexus		glnexus
graphmap2		graphmap2
gstama		gstama
gtdbtk/classifywf		gtdbtk/classifywf
gubbins		gubbins
gunc		gunc
gunzip		gunzip
hamronization		hamronization
hicap		hicap
hifiasm		hifiasm
hisat2		hisat2
hmmcopy		hmmcopy
hmmer		hmmer
homer		homer
hpsuissero		hpsuissero
ichorcna		ichorcna
idr		idr
imputeme/vcftoprs		imputeme/vcftoprs
iqtree		iqtree

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