Fossel

Local-first MCP memory for every repo you work on. Store conventions, bug fixes, reviewer patterns, and decisions in SQLite on your machine (with FTS5 search). Works with Cursor, Claude Desktop, and any stdio MCP client. No accounts, no cloud.

Quick start (~2 minutes)

Onboard (prints copy-paste MCP config + creates a sample memory):
```
npx -y fossel init
```
Add the JSON from the output to Cursor (~/.cursor/mcp.json) or Claude Desktop MCP settings, then restart the app.
Run the server (what the IDE launches; you can also run it manually for testing):
```
npx -y fossel
```

In chat, say:

remember: [anything about this repo]

Then ask:

what does Fossel remember about [topic]?

Verify it works — paste this in your AI chat:
```
remember: Fossel is working in this repo
```
Then immediately ask:
```
what does Fossel remember?
```
You should see your memory returned.

Database path: ~/.fossel/memory.db (override with FOSSEL_DB_PATH).

Why Fossel?

You get	Details
Local data	SQLite + migrations; nothing leaves your disk unless you share it.
Repo-scoped memory	One canonical key per repo; aliases collapse automatically.
Find anything	FTS5 + entity matching + optional semantic search; pin what matters.
Ambient capture	Natural-language `remember`; dedupes near-duplicates on save.
Conflict review	Flags related memories on save so the agent can reconcile contradictions.
Smart retrieval	Entity-aware ranking, access frequency tiebreaker, git-staleness markers.
Proactive maintenance	`consolidate_memory` surfaces stale, redundant, and contradicted entries.
Evolving schema	Startup migrations keep upgrades safe for existing databases.

Simple mode (recommended)

Two tools cover the 80% case. Neither needs you to specify type or tags.

`remember` — save a memory

Just send a sentence. Fossel infers the memory type, generates tags, resolves the repo, and merges near-duplicates into the existing row.

You: Remember: JWT lives in localStorage and 401 redirects to /login.

Agent calls remember({ note: "JWT lives in localStorage and 401 redirects to /login." })

Fossel: Stored as convention with tags jwt, auth, login for 7vignesh/fossel.

`get_context` — pull repo context

Pinned first, then recent, then FTS matches if you pass a query. Default limit of 8 is tuned for LLM context injection.

You: What does Fossel remember about auth here?

Agent calls get_context({ query: "auth" })

Fossel: returns a markdown block ready to drop into the system prompt.

That's it for daily use. The repo is detected from your cwd automatically.

Conflict review on save

When you save a note that relates to but does not duplicate an existing memory, remember appends a short notice listing the related memories — and flags ones that look like they may be contradicted or superseded (e.g. you say you no longer use something). The new memory is always stored; the notice is advisory so your AI assistant can decide whether to revise the old memory (update_memory) or remove it (delete_memory).

You: Remember: JWT no longer lives in localStorage; we moved it to httpOnly cookies.

Fossel: Stored memory 3 … Related existing memories you may want to reconcile:

#2 (similarity 0.50) ⚠ may contradict/supersede: JWT lives in localStorage and 401 redirects to /login.

This keeps memory from silently accumulating contradictions over time. Fossel stays dependency-free: it surfaces the candidates and lets the MCP client's own model make the judgment, rather than embedding an LLM in the server.

Temporal grounding

Relative dates rot: "fixed it last week" is useless six months later. When you save a note, Fossel resolves common relative-date phrases to absolute dates and appends them to the stored note, so the memory stays meaningful over time.

You: Remember: migrated the cron scheduler to a queue last week.

Stored as: "migrated the cron scheduler to a queue last week (last week = 2026-06-19)"

It handles yesterday/today/tomorrow, last/next week/month, N days/weeks/months ago, and in N days/weeks/months. Vague phrases ("recently", "soon") are left untouched rather than guessed at. No dependency.

Git-aware staleness

Temporal grounding for code. When a memory mentions a source file, Fossel records that file's git blob sha at write time. On retrieval, if the file has changed since — whether committed or sitting uncommitted in your working tree — the memory is flagged:

You: what does Fossel remember about auth?

Fossel:

(12) Auth is enforced in middleware.ts before every route. ⚠ may be stale: middleware.ts changed since this was written

The memory is never auto-deleted or auto-edited — the marker is advisory, so your AI assistant can decide whether the note still holds after reading the current file. This is the same "flag it, let the model judge" pattern as conflict review.

It fails safe end to end: outside a git repo, without git installed, or for a file that isn't tracked, Fossel simply records no reference and shows no marker — the feature is invisible until it has something real to say.

Fact supersession (`supersede_memory`)

When a memory becomes outdated, use supersede_memory instead of deleting it. The memory stops surfacing in live retrieval but the row and its history are preserved - this is the Zep invalidate-never-delete pattern. Optionally point at the memory that replaces it:

{ "id": 2, "superseded_by": 5, "reason": "Moved JWT to httpOnly cookies" }

The superseded memory keeps its changelog in metadata_json so you can trace what was believed when. Use delete_memory only when a fact was entered by mistake; use supersede_memory when it was true but is no longer.

Export / import

Your data is yours. Export everything Fossel knows as a portable JSON file:

{ "repo": "7vignesh/fossel" }

The envelope contains memories (including superseded ones) and repo aliases. Embeddings are deliberately excluded - they are re-derived on import so the file stays small and model-agnostic.

import_memories is additive and idempotent: it uses INSERT OR IGNORE on the source id, so re-importing the same file is a no-op and never clobbers existing rows. There is no replace mode; to wipe, delete the database file.

Invocation hint on `fossel init`

When you run fossel init, Fossel detects agent rule files in your workspace (AGENTS.md, CLAUDE.md, .cursor/rules) and appends a one-line hint telling the agent to call get_context at the start of a session. This is the difference between Fossel being installed and being actually used.

The hint is idempotent (a marker prevents duplicates) and never clobbers existing content - it only appends, and only to files that already exist.

High-quality fact extraction (`infer`)

For the best memories, have your AI assistant extract a single clean, self-contained fact (resolving pronouns and vague references) before calling remember, and pass an explicit type/tags with infer: false to store it verbatim:

{ "note": "Build artifacts are uploaded to the releases bucket.", "type": "convention", "tags": ["build", "release"], "infer": false }

This delegates extraction to the LLM the client already has — getting high-quality, atomic facts without adding an LLM dependency to Fossel. Omit infer (the default) to let Fossel's built-in heuristics infer type and tags.

Zero-prompt usage in Cursor

Fossel exposes a static MCP resource at fossel://context/current-repo. Cursor and Claude Desktop list resources on session start, so Fossel's pinned + recent memories show up before you type anything. Clients that don't list resources can still call get_context from the agent's first turn — that's all the prompting needed.

Entity-aware retrieval

When you save a memory, Fossel extracts named entities from the note — file paths, packages, function names, services, class names, and ticket references — and stores them in a side table. When you query, the same extraction runs on your question and memories sharing entities with the query get a retrieval boost via a third fusion leg (alongside FTS and vector search).

You: what does Fossel remember about express?

Fossel: boosts all memories mentioning express as an entity, even if the word "express" doesn't appear in the FTS match.

This is the same pattern Mem0 v3 uses for entity matching — adapted for code memory where identifiers are the entities. No LLM, no spaCy, no model download. Six entity kinds are extracted via regex heuristics: file, package, function, identifier, service, ticket.

Access tracking

Fossel tracks which memories are actually useful. Every time a memory is returned to you (via get_context or search_memory), its access_count is incremented and last_accessed_at is updated. This data is used as a tiebreaker in retrieval — between two equally-recent memories, the one that's been useful before surfaces first.

Access data also powers the consolidation tool (below) which identifies memories that were never retrieved and may be stale.

Memory consolidation (`consolidate_memory`)

Over time, repos accumulate contradictions, near-duplicates, and forgotten memories. consolidate_memory is a read-only analysis tool that surfaces candidates for cleanup without modifying any data:

You: run consolidate_memory for this repo

Fossel: returns a markdown report listing:

🕸️ Stale: never accessed, older than 90 days, not pinned

🔁 Redundant: ≥70% similar to another memory

⚠️ Contradicted: negation language overlapping with an existing fact

Plus suggested actions for each (supersede, merge, delete).

This is Fossel's version of Letta's "sleep-time compute" — without the LLM. The report is prompt-ready so your AI assistant can act on it immediately. The tool never auto-edits or auto-deletes; it flags and the model judges.

Advanced mode

Every original tool is still available for power users.

Tool	Purpose
`remember`	Save a memory in natural language — auto-infers type, tags, and repo
`get_context`	Retrieve relevant memories, pinned first then recent
`search_memory`	FTS search across notes, optional repo filter
`pin_memory` / `unpin_memory`	Pin important memories to always appear first
`delete_memory`	Delete by id
`update_memory`	Edit an existing memory by id
`supersede_memory`	Tombstone a memory so it stops surfacing but the row survives
`export_memories`	Export all memories as a portable JSON envelope
`import_memories`	Import memories from a JSON envelope (additive, idempotent)
`dedupe_repo`	Merge near-duplicate memories
`consolidate_memory`	Surface stale, redundant, and contradicted memories for review
`summarize_repo_context`	Markdown summary — useful for PR descriptions

Memory types

convention, bug_fix, reviewer_pattern, decision, issue, general.

Tool examples

store_context (explicit form):

{
  "repo": "7vignesh/fossel",
  "type": "convention",
  "note": "Use pnpm workspaces for all package scripts.",
  "tags": ["pnpm", "workspaces"]
}

pin_memory:

{ "id": 12 }

summarize_repo_context:

{ "repo": "RocketChat/Rocket.Chat" }

Fossel Context Summary: RocketChat/Rocket.Chat

📌 Pinned
- (12) Always run test matrix before merge.

Conventions
- (3) Use feature flags for UI experiments.

Bug Fixes
- (5) Fixed webhook retries by making queue idempotent.

dedupe_repo (dry run, then apply):

{ "repo": "7vignesh/fossel", "apply": false }
{ "repo": "7vignesh/fossel", "apply": true, "threshold": 0.85 }

Repo identity

Fossel resolves the canonical key for your workspace in this order:

git remote get-url origin → normalized to owner/repo
folder basename
anything you pass explicitly is recorded as an alias of the above

Memories saved under any alias are reachable from the canonical key, and npx fossel init automatically merges legacy alias rows (e.g. studentmanager → 7vignesh/student-manager).

Commands

npx -y fossel          # MCP server over stdio
npx -y fossel init     # onboarding + canonical key + safe alias merge
npx -y fossel doctor   # diagnose repo sprawl, duplicates, MCP config

`fossel init`

Detects the canonical repo key, prints Cursor and Claude Desktop MCP snippets, merges legacy alias rows into the canonical key, and inserts a starter memory only when the database is empty.

`fossel doctor`

Reports on:

canonical repo key for the workspace
sibling keys that look like the same repo (offers a fix)
exact-duplicate memory clusters (suggests fossel doctor --fix or dedupe_repo)
memory notes that still mention deprecated repo keys
detected MCP config files

Pass --fix to apply safe automated cleanup in one go: merge sibling repo keys, rewrite stale alias mentions, and remove exact-text duplicates. Without --fix it's read-only and exits non-zero on issues so it can run in CI.

Cursor MCP config

~/.cursor/mcp.json:

{
  "mcpServers": {
    "fossel": {
      "command": "npx",
      "args": ["-y", "fossel"],
      "env": {
        "FOSSEL_WORKSPACE": "${workspaceFolder}"
      }
    }
  }
}

Claude Desktop MCP config

{
  "mcpServers": {
    "fossel": {
      "command": "npx",
      "args": ["-y", "fossel"],
      "env": {
        "FOSSEL_WORKSPACE": "/path/to/your/project"
      }
    }
  }
}

FOSSEL_WORKSPACE pins Fossel to your project root. Without it, the server falls back to process.cwd(), which is occasionally wrong — Cursor and Claude Desktop sometimes spawn MCP servers from your home directory, which would silently route memories to the wrong repo. Cursor expands ${workspaceFolder} automatically; Claude Desktop needs an absolute path.

Development (from source)

npm install
npm run dev          # MCP server over stdio
npm run typecheck
npm test             # unit tests (node:test via tsx)
npm run smoke        # end-to-end MCP roundtrip
npm run bench        # retrieval benchmark (see bench/README.md)
npm run build
npm run start        # node dist/index.js
npm run ci           # typecheck + tests + build + smoke

Notes

Local-first: data stays on your machine.
Search: FTS5 keyword search by default. Optional hybrid semantic search via FOSSEL_EMBEDDINGS=1 (see below).
FOSSEL_DB_PATH: optional override for DB location (e.g. tests).
Schema: migrations live in src/db/migrate.ts; reference shape in src/db/schema.sql.

Hybrid semantic search (optional)

By default Fossel retrieves memories with FTS5 keyword search. Keyword search misses paraphrases — a query like "how does authentication work?" won't match a note that says "JWT lives in localStorage" because they share no words.

Set FOSSEL_EMBEDDINGS=1 to enable hybrid retrieval: a local, dependency-free embedding is computed for every memory and fused with the keyword results (Reciprocal Rank Fusion). This adds semantic recall while keeping FTS5's exact- match precision for identifiers, file paths, and ticket numbers.

{
  "mcpServers": {
    "fossel": {
      "command": "npx",
      "args": ["-y", "fossel"],
      "env": {
        "FOSSEL_WORKSPACE": "${workspaceFolder}",
        "FOSSEL_EMBEDDINGS": "1"
      }
    }
  }
}

Properties:

Zero install weight / fully offline. The embedding is a deterministic feature-hashing of token unigrams and bigrams — no model download, no native dependency, no network. It runs instantly and keeps the local-first promise.
Opt-in. With the flag unset, Fossel behaves exactly as before: no vectors are written and retrieval is FTS-only.
Self-healing index. Memories created before enabling the flag are embedded on demand the first time the repo is searched.
Pluggable. embedText in src/lib/embeddings.ts is the single entry point, so a stronger embedder (transformers.js, ONNX, or a remote model) can be swapped in later without touching callers. Bump EMBEDDING_VERSION to trigger automatic re-indexing of stale vectors.

Vectors are stored in a memory_embeddings side table keyed by memory rowid and cleaned up via trigger when a memory is deleted.

Plugging in a stronger embedder (optional)

The built-in hashed embedder catches lexical and n-gram overlap but not pure synonyms — the benchmark puts that ceiling at 33% on synonym queries. For higher quality semantic recall, point FOSSEL_EMBEDDER_CMD at a command that reads text on stdin and prints vectors on stdout:

{
  "env": {
    "FOSSEL_EMBEDDINGS": "1",
    "FOSSEL_EMBEDDER_CMD": "node /path/to/my-embedder.js"
  }
}

A ready-to-use reference implementation is included at examples/embedder-transformers.mjs. It uses transformers.js with a quantized MiniLM model (~30 MB, downloaded once then fully offline). You install the runtime yourself:

npm i @huggingface/transformers

Fossel gains no dependency from this — that's the point of the hook.

Protocol

Fossel speaks two shapes, and an embedder should handle both:

Shape	stdin	stdout
Batch (2+ texts)	one JSON-encoded string per line	one JSON array of numbers per line, same order
Single (1 text)	the raw text	one JSON array of numbers

Batching is not optional in practice. Embedding is done per memory, so under a one-text-per-spawn protocol indexing a repo means one process spawn — and for a real model, one model load — per memory. Batching makes the whole index cost a single spawn regardless of size: in the test suite, indexing 30 additional memories costs exactly one further invocation.

Existing single-text embedders keep working unchanged. Fossel detects a non-batch-capable embedder by validating that it got back exactly as many vectors as it sent texts, and falls back to per-text calls when it did not — so compatibility is handled by validation, not by extra configuration.

Properties:

You own the model. Fossel stays dependency-free; the embedder is your script (a transformers.js/ONNX runner, a local model server CLI, etc.).
Isolated vectors. External vectors are tagged with a version derived from the embedder command, so they are never compared against the built-in hashed vectors and switching embedders re-indexes automatically.
Graceful degradation. If the command fails, times out, mis-implements the batch protocol, or returns invalid output, Fossel falls back to the built-in embedder so a write is never lost.

Repository intake / reproducible setup

Build the Docker image

docker build -t fossel:local .

This runs the full CI pipeline (typecheck, test, build, smoke) during the build stage. If the image builds successfully, the repo is validated.

Run validation inside Docker

The multi-stage build validates during docker build. If the image builds successfully, all checks have already passed. To inspect the runtime image:

docker run --rm fossel:local node -e "require('./dist/index.js')"

To re-run the full CI pipeline in a fresh container (without layer cache):

docker build --no-cache --target builder -t fossel:ci .

Commands expected to pass

Command	Purpose
`npm run typecheck`	TypeScript strict-mode type checking
`npm run test`	Unit tests (node:test via tsx)
`npm run build`	Production build via tsup
`npm run smoke`	End-to-end MCP roundtrip against a temp DB
`npm run ci`	All of the above in sequence

Assumptions

Node 22.x (pinned in Dockerfile as node:22.12.0-bookworm-slim)
No network access required at runtime or during tests
No environment variables required for validation (test DB is ephemeral via FOSSEL_DB_PATH)
better-sqlite3 requires native compilation (build tools present in builder stage)

Benchmarks

Retrieval quality is measured, not asserted. npm run bench runs a committed eval set of 45 memories and 33 labelled queries for a fictional repo and reports hit@k, recall@k, MRR and nDCG for each retrieval mode.

Search surface (pure ranked search contribution), limit 10:

Mode	hit@1	hit@3	hit@5	hit@10	recall@5	MRR	nDCG@10
`fts`	72.7%	87.9%	90.9%	90.9%	85.6%	0.794	0.792
`vector`	51.5%	69.7%	72.7%	84.9%	70.2%	0.632	0.668
`hybrid`	78.8%	87.9%	87.9%	90.9%	82.6%	0.832	0.809

hit@5 by query category:

Category	`fts`	`vector`	`hybrid`
exact	100%	100%	100%
identifier	100%	100%	100%
path	100%	100%	100%
ticket	100%	100%	100%
superseded	100%	100%	100%
multi	100%	66.7%	100%
paraphrase	90.0%	50.0%	80.0%
synonym	33.3%	0%	33.3%

What these numbers say, including the parts that aren't flattering:

Keyword search carries most of the weight. BM25 plus a three-tier match strategy — AND, then OR, then stemmed-prefix — reaches 90.9% hit@5 on its own. The stemmed-prefix tier alone was worth +9.1 points of hit@5: FTS5 has no stemming, so queries were failing purely on inflection ("alerts" not matching "alert channel").
Hybrid buys the top slot, and costs a little breadth. It wins hit@1 by 6.1 points and has clearly the best MRR and nDCG@10, which is what matters when the result is injected into a prompt and the first entry gets read most carefully. It is 3 points behind FTS-only at hit@5 and recall@5, because the built-in hashed embedder is still the weaker signal and fusing it in displaces some good keyword hits. That trade is deliberate and measured, not accidental.
Synonym queries are still the weak spot. Connecting "why is this still one deployable unit?" to a note about microservices needs real semantic understanding, which feature-hashed embeddings do not have. 33% is the honest ceiling of the zero-dependency approach; a stronger embedder via FOSSEL_EMBEDDER_CMD is the way past it.

Three ideas were implemented, measured, and removed because the numbers did not support them: a cosine score floor on the vector leg, adaptive fusion weights keyed on FTS match strength, and RM3 pseudo-relevance-feedback query expansion. The reasoning for each is recorded in src/lib/fusion.ts and src/lib/fts.ts so nobody re-tries them blindly.

A LongMemEval-S adapter is included for cross-project comparability; that dataset is not redistributed and must be downloaded. See bench/README.md for metric definitions, the dataset design constraints, and how to run it.

Community

If Fossel saves you time, star the repo and open an issue for bugs or ideas - that helps others discover it too.

Name		Name	Last commit message	Last commit date
.github		.github
bench		bench
examples		examples
scripts		scripts
src		src
tests		tests
.dockerignore		.dockerignore
.gitignore		.gitignore
AGENTS.md		AGENTS.md
CHANGELOG.md		CHANGELOG.md
CONTRIBUTING.md		CONTRIBUTING.md
Dockerfile		Dockerfile
LICENSE		LICENSE
README.md		README.md
index.html		index.html
package-lock.json		package-lock.json
package.json		package.json
tsconfig.json		tsconfig.json
tsup.config.ts		tsup.config.ts
vercel.json		vercel.json

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Fossel

Quick start (~2 minutes)

Why Fossel?

Simple mode (recommended)

remember — save a memory

get_context — pull repo context

Conflict review on save

Temporal grounding

Git-aware staleness

Fact supersession (supersede_memory)

Export / import

Invocation hint on fossel init

High-quality fact extraction (infer)

Zero-prompt usage in Cursor

Entity-aware retrieval

Access tracking

Memory consolidation (consolidate_memory)

Advanced mode

Memory types

Tool examples

Repo identity

Commands

fossel init

fossel doctor

Cursor MCP config

Claude Desktop MCP config

Development (from source)

Notes

Hybrid semantic search (optional)

Plugging in a stronger embedder (optional)

Protocol

Repository intake / reproducible setup

Build the Docker image

Run validation inside Docker

Commands expected to pass

Assumptions

Benchmarks

Community

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