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EBISPOT

EMBL-EBI Samples, Phenotypes, and Ontologies Team

66 followers
https://www.ebi.ac.uk/spot/

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efo efo Public

Github repo for the Experimental Factor Ontology (EFO)

Python 64 15
DUO DUO Public

Ontology for consent codes and data use requirements

Makefile 70 17
CMPO CMPO Public

Cellular Microscopy Phenotype Ontology

Python 6 2
ols4 ols4 Public

The EMBL-EBI Ontology Lookup Service (OLS)

Java 96 43

Repositories

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Showing 10 of 88 repositories

gwas-sumstats-tools Public
A toolkit for processing, validating, and formatting GWAS (Genome-Wide Association Studies) summary statistics files for submission to the GWAS Catalog.

EBISPOT/gwas-sumstats-tools’s past year of commit activity

Python 14 Apache-2.0 2 4 5 Updated Jul 8, 2026
gwas-assoc-tools Public
Tools for submitting top associations to the GWAS Catalog

EBISPOT/gwas-assoc-tools’s past year of commit activity

Python 0 Apache-2.0 0 5 1 Updated Jul 8, 2026
gwas-rest-api Public
Refactoring Code for Rest API

EBISPOT/gwas-rest-api’s past year of commit activity

Java 0 Apache-2.0 0 3 5 Updated Jul 8, 2026
oxo2 Public
A SSSOM compliant implementation of OxO that is backwards compatible with OxO version 1

EBISPOT/oxo2’s past year of commit activity

Java 1 Apache-2.0 0 0 8 Updated Jul 8, 2026
environmental-exposure-ontology Public Forked from EnvironmentOntology/environmental-exposure-ontology
Modular environmental exposures ontology

EBISPOT/environmental-exposure-ontology’s past year of commit activity

Makefile 0 21 0 1 Updated Jul 7, 2026
efo Public
Github repo for the Experimental Factor Ontology (EFO)

EBISPOT/efo’s past year of commit activity

Python 64 15 195 (2 issues need help) 12 Updated Jul 7, 2026
gwas-data-commons Public
This repo will be having common components used across multiple services

EBISPOT/gwas-data-commons’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 6, 2026
GrEBI Public
HPC aggregation pipeline and API/MCP server for LLM-mediated biomedical data integration

EBISPOT/GrEBI’s past year of commit activity

Jupyter Notebook 4 Apache-2.0 4 17 0 Updated Jul 6, 2026
gwas-mcp Public
GWAS Catalog Model Context Protocol server, supporting natural language queries of associations, studies, and traits

EBISPOT/gwas-mcp’s past year of commit activity

Python 5 Apache-2.0 0 0 0 Updated Jul 6, 2026
gwas-curation-service Public

EBISPOT/gwas-curation-service’s past year of commit activity

Java 0 0 11 5 Updated Jul 3, 2026

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