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Gracefully handle low-coverage runs with explicit failure output (instead of crashing) [fix #109] - #159

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Gracefully handle low-coverage runs with explicit failure output (instead of crashing) [fix #109]#159
MikeWLloyd wants to merge 3 commits into
FRED-2:masterfrom
MikeWLloyd:master

change from exit to warn to allow nextflow to capture output on 'fail'

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