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[ARI:0001019, ARI:0001090, ARI:0001098] - mappings review #74

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Merged
KrishnaTO merged 4 commits into from
Aug 30, 2026
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[ARI:0001019, ARI:0001090, ARI:0001098] - mappings review #74

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8ddbd6e
[ARI:0001090] - mappings review
linikujp Aug 20, 2026
c334746
[ARI:0001019, ARI:0001090] - mappings review
linikujp Aug 21, 2026
989d3bb
[ARI:0001019, ARI:0001090, ARI:0001098] - mappings review
linikujp Aug 21, 2026
4f1a18b
Merge branch 'main' into edit/linikujp/mappings-review-1787245467
KrishnaTO Aug 25, 2026
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6 changes: 6 additions & 0 deletions mappings/ari.equivalencies.tsv
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Expand Up @@ -500,4 +500,10 @@ ARI 0001143 Neuromyelitis optica skos:exactMatch icd10cm G36.0 manual github:aar
ARI 0001143 Neuromyelitis optica skos:exactMatch ORPHA 71211 manual github:aaronabend
ARI 0001143 Neuromyelitis optica skos:exactMatch mesh D009471 manual github:aaronabend
ARI 0001143 Neuromyelitis optica skos:exactMatch OMIM NoTermFound manual-absent github:aaronabend
ARI 0001098 Hemophilia B Leyden skos:exactMatch MONDO 0850054 manual github:linikujp
ARI 0001098 Hemophilia B Leyden skos:exactMatch ORPHA 617930 manual github:linikujp
ARI 0001090 Essential mixed cryoglobulinemia skos:exactMatch MONDO 0007407 manual github:linikujp
ARI 0001090 Essential mixed cryoglobulinemia skos:exactMatch ORPHA 91138 manual github:linikujp
ARI 0001019 Antisynthetase syndrome skos:exactMatch MONDO 0019344 manual github:linikujp
ARI 0001019 Antisynthetase syndrome skos:exactMatch ORPHA 81 manual github:linikujp
ARI 0001056 Birdshot chorioretinopathy skos:exactMatch ORPHA 179 manual github:KrishnaTO
6 changes: 6 additions & 0 deletions mappings/ari.sssom.tsv
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Expand Up @@ -520,4 +520,10 @@
ARI:0001143 Neuromyelitis optica skos:exactMatch ORPHA:71211 ORPHA semapv:ManualMappingCuration github:aaronabend 2026-08-17
ARI:0001143 Neuromyelitis optica skos:exactMatch mesh:D009471 mesh semapv:ManualMappingCuration github:aaronabend 2026-08-17
ARI:0001143 Neuromyelitis optica skos:exactMatch sssom:NoTermFound OMIM semapv:ManualMappingCuration github:aaronabend 2026-08-17
ARI:0001098 Hemophilia B Leyden skos:exactMatch MONDO:0850054 MONDO semapv:ManualMappingCuration github:linikujp 2026-08-21

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mappings/confirmed-not-stored 

MONDO:0850054 is confirmed for ARI:0001098 but is not stored on the disease in ontologies/ari_t1d.owl, so the confirmation is not reflected in what users see.
ARI:0001098 Hemophilia B Leyden skos:exactMatch ORPHA:617930 ORPHA semapv:ManualMappingCuration github:linikujp 2026-08-21

Check warning on line 524 in mappings/ari.sssom.tsv

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GitHub Actions / validate

mappings/confirmed-not-stored 

ORPHA:617930 is confirmed for ARI:0001098 but is not stored on the disease in ontologies/ari_t1d.owl, so the confirmation is not reflected in what users see.
ARI:0001090 Essential mixed cryoglobulinemia skos:exactMatch MONDO:0007407 MONDO semapv:ManualMappingCuration github:linikujp 2026-08-21

Check warning on line 525 in mappings/ari.sssom.tsv

View workflow job for this annotation

GitHub Actions / validate

mappings/confirmed-not-stored 

MONDO:0007407 is confirmed for ARI:0001090 but is not stored on the disease in ontologies/ari_t1d.owl, so the confirmation is not reflected in what users see.
ARI:0001090 Essential mixed cryoglobulinemia skos:exactMatch ORPHA:91138 ORPHA semapv:ManualMappingCuration github:linikujp 2026-08-21

Check warning on line 526 in mappings/ari.sssom.tsv

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GitHub Actions / validate

mappings/confirmed-not-stored 

ORPHA:91138 is confirmed for ARI:0001090 but is not stored on the disease in ontologies/ari_t1d.owl, so the confirmation is not reflected in what users see.
ARI:0001019 Antisynthetase syndrome skos:exactMatch MONDO:0019344 MONDO semapv:ManualMappingCuration github:linikujp 2026-08-21

Check warning on line 527 in mappings/ari.sssom.tsv

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GitHub Actions / validate

mappings/confirmed-not-stored 

MONDO:0019344 is confirmed for ARI:0001019 but is not stored on the disease in ontologies/ari_t1d.owl, so the confirmation is not reflected in what users see.
ARI:0001019 Antisynthetase syndrome skos:exactMatch ORPHA:81 ORPHA semapv:ManualMappingCuration github:linikujp 2026-08-21

Check warning on line 528 in mappings/ari.sssom.tsv

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GitHub Actions / validate

mappings/confirmed-not-stored 

ORPHA:81 is confirmed for ARI:0001019 but is not stored on the disease in ontologies/ari_t1d.owl, so the confirmation is not reflected in what users see.
ARI:0001056 Birdshot chorioretinopathy skos:exactMatch ORPHA:179 ORPHA semapv:ManualMappingCuration github:KrishnaTO 2026-08-20
3 changes: 3 additions & 0 deletions ontologies/ari_t1d.owl
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Expand Up @@ -3526,6 +3526,7 @@ The trigger for antisynthetase syndrome is unknown, but it may be associated wit
<ARI_AuthorDate rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2024-09</ARI_AuthorDate>
<ARI_SurveyCode rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ASY</ARI_SurveyCode>
<ARI_ChangeLog rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2026-06-15 10:37 | Importer | Imported from ARI core reports</ARI_ChangeLog>
<ARI_ChangeLog rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2026-08-21 17:35 | linikujp | Cross-reference review: confirmed MONDO 0019344; confirmed ORPHANET 81</ARI_ChangeLog>
</owl:NamedIndividual>

<owl:NamedIndividual rdf:about="#Sym_0001019_176">
Expand Down Expand Up @@ -9734,6 +9735,7 @@ When mastocytosis is not limited to the skin, it is called systemic mastocytosis
<ARI_AuthorDate rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2024-09</ARI_AuthorDate>
<ARI_SurveyCode rdf:datatype="http://www.w3.org/2001/XMLSchema#string">EMC</ARI_SurveyCode>
<ARI_ChangeLog rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2026-06-15 10:37 | Importer | Imported from ARI core reports</ARI_ChangeLog>
<ARI_ChangeLog rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2026-08-21 17:35 | linikujp | Cross-reference review: confirmed MONDO 0007407; confirmed ORPHANET 91138</ARI_ChangeLog>
</owl:NamedIndividual>

<owl:NamedIndividual rdf:about="#Sym_0001090_824">
Expand Down Expand Up @@ -10713,6 +10715,7 @@ ASA is not a concern except for people trying to conceive.</rdfs:comment>
<ARI_DefSource rdf:datatype="http://www.w3.org/2001/XMLSchema#string">1% of all cases of hemophilia B; NR</ARI_DefSource>
<ARI_Version rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2.1</ARI_Version>
<ARI_ChangeLog rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2026-06-15 10:37 | Importer | Imported from ARI core reports</ARI_ChangeLog>
<ARI_ChangeLog rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2026-08-21 17:35 | linikujp | Cross-reference review: confirmed MONDO 0850054; confirmed ORPHANET 617930</ARI_ChangeLog>
</owl:NamedIndividual>

<owl:NamedIndividual rdf:about="https://diseases.autoimmuneregistry.org/disease/ARI_0001099">
Expand Down
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