Search results

Empty string gene symbols in SV data create spurious .fus column in create_gene_binary()

Status: Open.

#356 In MSKCC-Epi-Bio/gnomeR;

· karissawhiting opened on Jun 17, 2026

Add missing panel from AACR Project GENIE public version 17_0

Status: Open.

#354 In MSKCC-Epi-Bio/gnomeR;

· MOOKY7 opened on May 16, 2025

.select_to_varnames() and .formula_list_to_named_list() to be deprecated

Status: Open.

#348 In MSKCC-Epi-Bio/gnomeR;

· ddsjoberg opened on Aug 23, 2024

Add summarize_by_patient() function

Status: Open.

#345 In MSKCC-Epi-Bio/gnomeR;

· karissawhiting opened on Jun 27, 2024

add unit testing for add_point_mut()

Status: Open.

#343 In MSKCC-Epi-Bio/gnomeR;

· hfuchs5 opened on May 9, 2024

Update Docs to make sure new SV is canon-cbio has deprecated fusion files for sv

Status: Open.

#338 In MSKCC-Epi-Bio/gnomeR;

· hfuchs5 opened on Nov 9, 2023

unit testing for tbl_genomic(..., wide = T) needed

Status: Open.

#337 In MSKCC-Epi-Bio/gnomeR;

· hfuchs5 opened on Nov 9, 2023

unit testing for mutation type attribute on create_gene_binary()

Status: Open.

#336 In MSKCC-Epi-Bio/gnomeR;

· hfuchs5 opened on Nov 2, 2023

Large datasets (1,000s of patients) takes a long time in summarize_by_gene()

Status: Open.

#329 In MSKCC-Epi-Bio/gnomeR;

· hfuchs5 opened on Oct 22, 2023

Check how vdiffr is counted for code coverage in tests

Status: Open.

#327 In MSKCC-Epi-Bio/gnomeR;

· karissawhiting opened on Oct 5, 2023

Add annotation of point mutations in create gene binary pipeline

ready for review

Status: Open.

#322 In MSKCC-Epi-Bio/gnomeR;

· karissawhiting opened on Aug 31, 2023

cbio vs synapse GENIE BPC data fusion discrepancy in names

future

Status: Open.

#312 In MSKCC-Epi-Bio/gnomeR;

· hfuchs5 opened on Jun 20, 2023