Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -47,3 +47,8 @@ models
temp
.vscode
.env
.DS_Store
!phantoms/epi-distortion_phantom/data/*.nii
!phantoms/epi-distortion_phantom/b0-flipped/*.nii
!phantoms/epi-distortion_phantom/*.bval
!phantoms/epi-distortion_phantom/*.bvec
19 changes: 19 additions & 0 deletions phantoms/epi-distortion_phantom/README.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
# EPI Distortion Phantom

## Description
A QIBA diffusion phantom acquired on a 3T scanner, intended for testing EPI distortion correction pipelines.

## Contents
| File | Description |
|------|-------------|
| `data/data.nii` | Original DWI acquisition |
| `b0-flipped/data_flipped.nii` | DWI acquisition with flipped phase-encoding direction |
| `data_bvals.bval` | B-values |
| `data_bvecs.bvec` | Gradient directions |

## Usage
The two acquisitions (`data.nii` and `data_flipped.nii`) have opposite phase-encoding directions and can be used as input to EPI distortion correction tools such as FSL's `topup`.

## Notes
- Scanner: 3T
- Phantom: QIBA diffusion phantom
Binary file not shown.
Binary file added phantoms/epi-distortion_phantom/data/data.nii
Binary file not shown.
1 change: 1 addition & 0 deletions phantoms/epi-distortion_phantom/data_bvals.bval
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
0 5 5 5 5 5 5 10 10 10 10 10 10 20 20 20 20 20 20 30 30 30 30 30 30 50 50 50 50 50 50 100 100 100 100 100 100 200 200 200 200 200 200 300 300 300 300 300 300 400 400 400 400 400 400 500 500 500 500 500 500 40 40 40 40 40 40 70 70 70 70 70 70 800 800 800 800 800 800
3 changes: 3 additions & 0 deletions phantoms/epi-distortion_phantom/data_bvecs.bvec
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
0 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107 0.707107 -0.707107 0 0 0.707107 -0.707107
0 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107 0 0 0.707107 0.707107 0.707107 0.707107
0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0 0.707107 0.707107 0.707107 -0.707107 0 0
Loading