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@Pappulab

Pappu Lab

Github repository for Rohit Pappu's lab at Washington University in St. Louis

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  1. localCIDER localCIDER Public

    localCIDER - sequence analysis tool for disordered protein sequences

    Python 26 14

  2. LASSI LASSI Public

    LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions

    C 20 9

  3. King-etal-Nucleoli King-etal-Nucleoli Public

    This GitHub repository contains the code and data for the manuscript "Macromolecular Condensation Organizes Nucleolar Sub-Phases to Set Up a pH Gradient." Available at: https://www.cell.com/cell/fu…

    Jupyter Notebook 4

  4. Data-and-Analysis-for-PLCD-Mixtures Data-and-Analysis-for-PLCD-Mixtures Public

    Data and Analysis code used in the following paper: "Phase Separation of Protein Mixtures is Driven by the Interplay of Homotypic and Heterotypic Interactions"

    Cython 3

  5. FIREBALL FIREBALL Public

    A suite of computational tools for constructing, analyzing, and fitting phase diagrams and coil-to-globule transitions.

    Python 3 2

  6. damfret_classifier damfret_classifier Public

    This is a Python package for classifying DAmFRET data based on supervised learning. The data can also be analyzed to allow mechanistic inferences regarding nucleation of ordered assemblies.

    Python 2

Repositories

Showing 10 of 24 repositories
  • Biomolecular-condensates-can-function-as-inherent-catalysts Public

    Repository for Chen et al. Biomolecular condensates can function as inherent catalysts - Simulation Analysis

    Pappulab/Biomolecular-condensates-can-function-as-inherent-catalysts's past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 6, 2026
  • phase_behaviors_near_criticality_A1LCD Public Forked from gauravmitra1995/phase_behaviors_near_criticality_A1LCD

    All code and analyses to study near-critical vs off-critical phase behaviors of the prion-like low complexity domain A1-LCD

    Pappulab/phase_behaviors_near_criticality_A1LCD's past year of commit activity
    C 1 1 0 0 Updated May 6, 2026
  • FIREBALL Public

    A suite of computational tools for constructing, analyzing, and fitting phase diagrams and coil-to-globule transitions.

    Pappulab/FIREBALL's past year of commit activity
    Python 3 LGPL-3.0 2 0 0 Updated Nov 28, 2025
  • LASSI Public

    LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions

    Pappulab/LASSI's past year of commit activity
    C 20 GPL-3.0 9 3 0 Updated Sep 3, 2025
  • King-etal-Nucleoli Public

    This GitHub repository contains the code and data for the manuscript "Macromolecular Condensation Organizes Nucleolar Sub-Phases to Set Up a pH Gradient." Available at: https://www.cell.com/cell/fulltext/S0092-8674(24)00232-0

    Pappulab/King-etal-Nucleoli's past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Aug 22, 2025
  • Pappulab/metastable-condensates's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 22, 2025
  • Pappulab/MATR3_effective_delta's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 22, 2025
  • Pappulab/microphase-assemblies's past year of commit activity
    Python 0 0 0 0 Updated Aug 6, 2025
  • Motility Public
    Pappulab/Motility's past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated May 23, 2025
  • material_properties Public

    Data repository and analysis routines used to study material properties of prion-like low-complexity domains as described in https://doi.org/10.1038/s41567-024-02558-1

    Pappulab/material_properties's past year of commit activity
    MATLAB 1 0 0 0 Updated May 4, 2025

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