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feat(agent-core-v2): add the permission mode reminder env switch - #309

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fix/permission-mode-reminder-env
Sep 14, 2026
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elkaix merged 2 commits into
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fix/permission-mode-reminder-env

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@elkaix

@elkaix elkaix commented Sep 14, 2026 •

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Related Issue

No tracked issue; standalone enhancement.

Problem

The auto permission-mode reminder is always injected into the model context. Operators embedding the agent in automated flows have no way to turn it off, and every reminder spends context tokens on a instruction the caller may already enforce.

What changed

  • New env switch PYTHINKER_CODE_PERMISSION_MODE_REMINDER: set it to a false value (0, false, off, empty) to stop the auto reminder from being registered with the agent lifecycle. Any other value, or the variable being unset, keeps today's behavior.
  • AgentPermissionModeService reads the switch through IBootstrapService.getEnv at construction and skips activateReminderWhenReady when disabled.
  • Documented the variable in docs/configuration/env-vars.md.
  • Changeset included (minor).

Checklist

  • I have read the CONTRIBUTING document.
  • No external issue required (maintainer-authored change).
  • Added tests: enable-by-default and disable paths covered in permissionMode.test.ts; lifecycle suite stub updated.
  • Ran gen-changesets rules; changeset present.
  • Doc update included.

Summary by CodeRabbit

  • New Features

    • Added the PYTHINKER_CODE_PERMISSION_MODE_REMINDER environment variable to control automatic permission-mode reminders.
    • Set it to false, 0, or an empty value to suppress reminders. Other non-empty values keep them enabled.
  • Documentation

    • Added configuration guidance for the new environment variable.
  • Bug Fixes

    • Permission-mode reminders now respect the configured environment setting.

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  • .changeset/permission-mode-reminder-env.md
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  • packages/agent-core-v2/src/agent/permissionMode/permissionModeService.ts
  • packages/agent-core-v2/test/agent/permissionMode/permissionMode.test.ts
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  • packages/agent-core-v2/test/agent/permissionMode/permissionMode.test.ts

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📝 Walkthrough

Walkthrough

The permission-mode reminder now uses PYTHINKER_CODE_PERMISSION_MODE_REMINDER. The service skips registration for empty or false values. Documentation, a changeset, and tests cover the configuration.

Changes

Permission reminder toggle

Layer / File(s) Summary
Environment-controlled reminder activation
packages/agent-core-v2/src/agent/permissionMode/permissionModeService.ts, docs/configuration/env-vars.md, .changeset/permission-mode-reminder-env.md
AgentPermissionModeService reads the environment through IBootstrapService and conditionally registers the reminder. The documentation and changeset describe the variable.
Reminder toggle test coverage
packages/agent-core-v2/test/agent/permissionMode/permissionMode.test.ts, packages/agent-core-v2/test/session/agentLifecycle/agentLifecycle.test.ts
Tests verify that 0 and empty values suppress injection and that 1 allows injection. The lifecycle fixture now provides getEnv.

Priority: ⬇️ Low

Estimated code review effort: 2 (Simple) | ~10 minutes

Change: Feature

Merge Risk: ⚪ Minimal · up to c19e8

The permission reminder toggle is documented, and the previously identified behavior and release-classification issues are resolved.

🚥 Pre-merge checks | ✅ 5
✅ Passed checks (5 passed)
Check name Status Explanation
Title check ✅ Passed The title uses the required feat conventional-commit prefix, stays within 72 characters, uses imperative wording, and accurately describes the environment switch.
Description check ✅ Passed The description includes the problem, implementation details, tests, documentation, and changeset status. It explains that no issue applies because this is a maintainer-authored change.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check. Docstring coverage is scoped to functions touched by this diff. Analyzed 0 functions across 3…
Linked Issues check ✅ Passed Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check ✅ Passed Check skipped because no linked issues were found for this pull request.

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pnpm dlx https://pkg.pr.new/@pymodel/pythinker-code@2b761b4
npx https://pkg.pr.new/@pymodel/pythinker-code@2b761b4

commit: 2b761b4

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Actionable comments posted: 2

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Inline comments:
In @.changeset/permission-mode-reminder-env.md:
- Line 2: Update the changeset declaration for `@pymodel/pythinker-code` from
patch to minor to reflect the added user-configurable environment setting.

In `@packages/agent-core-v2/src/agent/permissionMode/permissionModeService.ts`:
- Line 44: Update the permission-mode reminder guard around parseBooleanEnv and
PERMISSION_MODE_REMINDER_ENV so both unset and explicitly empty values skip
activateReminderWhenReady, while preserving existing behavior for configured
boolean values. Add a Vitest case covering '' and update the corresponding
configuration documentation entry to state that an empty value disables the
reminder.

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  • .changeset/permission-mode-reminder-env.md
  • docs/configuration/env-vars.md
  • packages/agent-core-v2/src/agent/permissionMode/permissionModeService.ts
  • packages/agent-core-v2/test/agent/permissionMode/permissionMode.test.ts
  • packages/agent-core-v2/test/session/agentLifecycle/agentLifecycle.test.ts

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Comment thread .changeset/permission-mode-reminder-env.md Outdated
Comment thread packages/agent-core-v2/src/agent/permissionMode/permissionModeService.ts Outdated
Set PYTHINKER_CODE_PERMISSION_MODE_REMINDER to a false value to stop
injecting the auto permission-mode reminder into the model context.
@elkaix
elkaix force-pushed the fix/permission-mode-reminder-env branch from 583c427 to c19e897 Compare September 14, 2026 18:57
@elkaix
elkaix merged commit 3c21d16 into main Sep 14, 2026
24 checks passed
@elkaix
elkaix deleted the fix/permission-mode-reminder-env branch September 14, 2026 19:49
elkaix added a commit that referenced this pull request Sep 15, 2026
Bring in the permission-mode reminder env switch from #309.
elkaix added a commit that referenced this pull request Sep 15, 2026
This PR was opened by the [Changesets
release](https://github.com/changesets/action) GitHub action. When
you're ready to do a release, you can merge this and the packages will
be published to npm automatically. If you're not ready to do a release
yet, that's fine, whenever you add more changesets to main, this PR will
be updated.


# Releases
## @pymodel/pythinker-code@2.0.0

### Major Changes

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - Remote Control is always
available — `pythinker rc`, `pythinker web --remote-control` and
`/remote-control` no longer need an experimental flag. Session indexing
and global search move to the new `[database]` section: set
`PYTHINKER_CODE_PERSISTENCE_MINIDB_READMODEL` (was
`PYTHINKER_CODE_EXPERIMENTAL_PERSISTENCE_MINIDB_READMODEL`) and
`PYTHINKER_CODE_SEARCH_WORKER` (was
`PYTHINKER_CODE_EXPERIMENTAL_SEARCH_WORKER`), or `[database] base` and
`[database] search` in `config.toml`.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - The subagent model pool
is always available. Remove
`PYTHINKER_CODE_EXPERIMENTAL_SECONDARY_MODEL` from your environment — it
no longer does anything, and `[secondary_model]` takes effect with no
opt-in.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - Remove the `${now}`
variable from custom system prompt templates. Delete `${now}` from your
`SYSTEM.md` and agent files — the agent still receives the current date.

### Minor Changes

- [#309](#309)
[`3c21d16`](3c21d16)
Thanks [@elkaix](https://github.com/elkaix)! - Add the
`PYTHINKER_CODE_PERMISSION_MODE_REMINDER` environment variable: set it
to a false value or an empty value to stop injecting the auto
permission-mode reminders into the model context.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - The server can now start
and stop Remote Control while it runs, through `GET` and `POST
/api/v1/remote-control`.

### Patch Changes

- [#308](#308)
[`ec99d66`](ec99d66)
Thanks [@elkaix](https://github.com/elkaix)! - Deliver background
question answers to the agent directly instead of via a saved output
file.

- [#308](#308)
[`ec99d66`](ec99d66)
Thanks [@elkaix](https://github.com/elkaix)! - Fix background questions
being cancelled as soon as the agent finishes its turn.

- [#313](#313)
[`09d69fe`](09d69fe)
Thanks [@elkholy90](https://github.com/elkholy90)! - Collapsed tool
cards now show a short outcome row and a width-aware header.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Exclude time spent with
the session closed from goal time budgets.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Preserve image and video
filenames in session history.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Fix print mode
(`pythinker -p`) ignoring the `PYTHINKER_DISABLE_TELEMETRY` environment
variable.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - The Remote Control
banner's Local UI link now carries the server token, so it opens without
a second sign-in.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - Remote Control now gzips
text, JSON, JavaScript, XML and SVG responses over the tunnel.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Remove the 24-hour limit
on goal time budgets.

- [#315](#315)
[`a7666f8`](a7666f8)
Thanks [@elkholy90](https://github.com/elkholy90)! - Skip the
confirmation prompt for rm -rf commands that target only /tmp or /temp
paths.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - Global search now
rebuilds its index instead of staying broken when the stored data is
corrupt or a write keeps failing.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - A background task that
finishes after its agent is closed no longer emits stray task events.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Add `-y, --yes` to
`pythinker upgrade` (alias `pythinker update`) to skip the confirmation
prompt and install the update directly.
## @pymodel/pythinker-desktop@1.0.0

### Major Changes

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - Remote Control is always
available — `pythinker rc`, `pythinker web --remote-control` and
`/remote-control` no longer need an experimental flag. Session indexing
and global search move to the new `[database]` section: set
`PYTHINKER_CODE_PERSISTENCE_MINIDB_READMODEL` (was
`PYTHINKER_CODE_EXPERIMENTAL_PERSISTENCE_MINIDB_READMODEL`) and
`PYTHINKER_CODE_SEARCH_WORKER` (was
`PYTHINKER_CODE_EXPERIMENTAL_SEARCH_WORKER`), or `[database] base` and
`[database] search` in `config.toml`.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - The subagent model pool
is always available. Remove
`PYTHINKER_CODE_EXPERIMENTAL_SECONDARY_MODEL` from your environment — it
no longer does anything, and `[secondary_model]` takes effect with no
opt-in.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - Remove the `${now}`
variable from custom system prompt templates. Delete `${now}` from your
`SYSTEM.md` and agent files — the agent still receives the current date.

### Minor Changes

- [#309](#309)
[`3c21d16`](3c21d16)
Thanks [@elkaix](https://github.com/elkaix)! - Add the
`PYTHINKER_CODE_PERMISSION_MODE_REMINDER` environment variable: set it
to a false value or an empty value to stop injecting the auto
permission-mode reminders into the model context.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - The server can now start
and stop Remote Control while it runs, through `GET` and `POST
/api/v1/remote-control`.

### Patch Changes

- [#308](#308)
[`ec99d66`](ec99d66)
Thanks [@elkaix](https://github.com/elkaix)! - Deliver background
question answers to the agent directly instead of via a saved output
file.

- [#308](#308)
[`ec99d66`](ec99d66)
Thanks [@elkaix](https://github.com/elkaix)! - Fix background questions
being cancelled as soon as the agent finishes its turn.

- [#313](#313)
[`09d69fe`](09d69fe)
Thanks [@elkholy90](https://github.com/elkholy90)! - Collapsed tool
cards now show a short outcome row and a width-aware header.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Exclude time spent with
the session closed from goal time budgets.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Preserve image and video
filenames in session history.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Fix print mode
(`pythinker -p`) ignoring the `PYTHINKER_DISABLE_TELEMETRY` environment
variable.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - The Remote Control
banner's Local UI link now carries the server token, so it opens without
a second sign-in.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - Remote Control now gzips
text, JSON, JavaScript, XML and SVG responses over the tunnel.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Remove the 24-hour limit
on goal time budgets.

- [#315](#315)
[`a7666f8`](a7666f8)
Thanks [@elkholy90](https://github.com/elkholy90)! - Skip the
confirmation prompt for rm -rf commands that target only /tmp or /temp
paths.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - Global search now
rebuilds its index instead of staying broken when the stored data is
corrupt or a write keeps failing.

- [#306](#306)
[`39b50b5`](39b50b5)
Thanks [@elkaix](https://github.com/elkaix)! - A background task that
finishes after its agent is closed no longer emits stray task events.

- [#307](#307)
[`49548fb`](49548fb)
Thanks [@elkaix](https://github.com/elkaix)! - Add `-y, --yes` to
`pythinker upgrade` (alias `pythinker update`) to skip the confirmation
prompt and install the update directly.

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Mohamed Elkholy <melkholy@techmatrix.com>
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