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Intermediate SAM file

Status: Open.

#152 In RabadanLab/arcasHLA;

· keder opened on May 11, 2026

--population Prior meaning

Status: Open.

#151 In RabadanLab/arcasHLA;

· Geneece opened on Apr 23, 2026

What is the alignment.p file format?

Status: Open.

#149 In RabadanLab/arcasHLA;

· jlac opened on Jul 30, 2025

Unable to create conda env with strict channel priority

Status: Open.

#146 In RabadanLab/arcasHLA;

· jonasfreimuth opened on Jun 12, 2025

population prior

Status: Open.

#145 In RabadanLab/arcasHLA;

· cjieming2 opened on Jun 10, 2025

[IndexError] invalid index to scalar variable

Status: Open.

#143 In RabadanLab/arcasHLA;

· asaksager opened on Jan 20, 2025

Negative copy number

Status: Open.

#142 In RabadanLab/arcasHLA;

· malonzm1 opened on Jan 15, 2025

Unexpected Explained Reads Calculation

Status: Open.

#139 In RabadanLab/arcasHLA;

· ddemelfi opened on Nov 19, 2024

new version of kallisto outputs have changed

Status: Open.

#138 In RabadanLab/arcasHLA;

· katahdin0 opened on Sep 23, 2024

samtools and kallisto versions not found

Status: Open.

#137 In RabadanLab/arcasHLA;

· arusa opened on Aug 23, 2024

Failure to check exit codes of run_command causes a hang

Status: Open.

#135 In RabadanLab/arcasHLA;

· pshaughn opened on Aug 6, 2024

pseudoalignments.tsv error

Status: Open.

#134 In RabadanLab/arcasHLA;

· Bondada20 opened on Jun 16, 2024