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Yoska393/README.md

👋 Hi, I'm Hayato

🎓 I’m a postdoc researcher at The University of Tokyo in Biostatistics.
🧪 I work on statistical & computational methods for life sciences, especially omics.
✉️ Contact: yoshioka [at] biomet [dot] org

  • 🔭 Current focus: multi-omics integration, plant-microbe interactions
  • 🐍 Languages: R, Python
  • 📈 Stats: Mixed model, Multivariate modeling, Machine Learning

Recent works

  • 🚀 Twostep: Nonlinear and mixed models for intermediate omics
  • 📐 rrda: Ridge Redundancy Analysis for high-dimensional omics data
  • 🌿 SoyPlantMicro: Machine Learning for Plant-Microbe Interactions

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  1. rrda rrda Public

    Ridge redundancy analysis (rrda) — An R package for high-dimensional multivariate modeling with ridge penalty and rank restraint, ideal for omics data. Includes model fitting, cross-validation, and…

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  2. Twostep Twostep Public

    The source code for the Simulation and application in the "Integration of Proxy Intermediate Omics traits into a Nonlinear Two-Step model for accurate phenotypic prediction"

    R 1

  3. ShapPlantMicro ShapPlantMicro Public

    Shapley Additive exPlanations (SHAP) for plant-microbe interactions

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  4. ReciprocalBLUP ReciprocalBLUP Public

    Reciprocal BLUP for multi-omics data: integrating genome, metabolome, and microbiome in soybean