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Graphical abstract: drop GPL logo, intuitive precision percentile #269

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Merged
ataha24 merged 1 commit into from
Aug 20, 2026
Merged

Graphical abstract: drop GPL logo, intuitive precision percentile #269

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39 changes: 15 additions & 24 deletions scripts/make_graphical_abstract.py
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Original file line number Diff line number Diff line change
Expand Up @@ -210,6 +210,13 @@ def pct_of(a, mm):
return NormalDist().cdf(z) * 100.0


def precision_pct(a, mm):
"""Precision percentile (higher = better): the % of trained raters this
placement is at least as precise as. Inverts the error-rank pct_of so the
displayed number matches the intuitive reading (90th = great)."""
return 100.0 - pct_of(a, mm)


def ordinal(p):
n = int(round(p))
suf = (
Expand Down Expand Up @@ -620,22 +627,6 @@ def ic_globe(cx, cy, s, color):
)


def ic_copyleft(cx, cy, s, color):
ax.add_patch(Circle((cx, cy), s, fill=False, ec=color, lw=1.6, zorder=7))
ax.add_patch(
Arc(
(cx, cy),
s * 1.15,
s * 1.15,
theta1=-50,
theta2=230,
ec=color,
lw=1.7,
zorder=7.1,
)
)


def ic_orcid(cx, cy, s, color="#A6CE39"):
ax.add_patch(Circle((cx, cy), s, fc=color, zorder=7))
txt(
Expand Down Expand Up @@ -1324,8 +1315,8 @@ def data_row(y, nb, count, label, color):
txt(
qx0 + 0.40,
qcy + 0.20,
f"“Your AC sits {COIN_MM} mm from consensus — the {ordinal(pct_of('AC', COIN_MM))} "
f"percentile, where trained raters land within {LM['AC']['p50']:.2f} mm.",
f"“Your AC sits {COIN_MM} mm from consensus — the {ordinal(precision_pct('AC', COIN_MM))} "
f"precision percentile, where trained raters land within {LM['AC']['p50']:.2f} mm.",
size=7.8,
style="italic",
)
Expand Down Expand Up @@ -1458,7 +1449,8 @@ def data_row(y, nb, count, label, color):
[("LIGO", 1.2), ("AC", 1.2), ("PMJ", 0.9), ("SPLE", 3.4)]
):
yy = P_y0 + 1.78 - i * 0.34
p = pct_of(a, mm)
p = pct_of(a, mm) # error-rank: drives the verdict tier/colour
disp = precision_pct(a, mm) # precision percentile (higher = better): shown
c = (
TIER["ex"]
if p < 50
Expand Down Expand Up @@ -1502,7 +1494,7 @@ def data_row(y, nb, count, label, color):
ax.add_patch(
Rectangle(
(rx0 + 1.48, yy - 0.11),
(rx1 - rx0 - 1.68) * p / 100,
(rx1 - rx0 - 1.68) * disp / 100,
0.075,
fc=c,
ec="none",
Expand All @@ -1512,7 +1504,7 @@ def data_row(y, nb, count, label, color):
txt(
rx1 - 0.22,
yy,
f"{v} · {ordinal(p)}",
f"{v} · {ordinal(disp)}",
size=7.2,
color=c,
weight="bold",
Expand Down Expand Up @@ -1552,7 +1544,6 @@ def data_row(y, nb, count, label, color):
LOGO = Path(OUT / "logos")
LOGO_H = 0.30
foundation = [
("gpl", "GPL-3.0 code", ic_copyleft),
("opendata", "Open reference data", ic_stack),
("templateflow", "TemplateFlow", ic_globe),
(
Expand Down Expand Up @@ -1686,6 +1677,6 @@ def _bbox(t):
f"({N_HUMAN}H + {N_MACAQ}M) · max spread {MAX_SPREAD:.1f} mm"
)
print(
f" {COIN_MM} mm -> {CAL_HARD} {ordinal(pct_of(CAL_HARD, COIN_MM))} pct · "
f"{CAL_EASY} {ordinal(pct_of(CAL_EASY, COIN_MM))} pct"
f" {COIN_MM} mm -> {CAL_HARD} {ordinal(precision_pct(CAL_HARD, COIN_MM))} pct · "
f"{CAL_EASY} {ordinal(precision_pct(CAL_EASY, COIN_MM))} pct"
)
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