BoundaryOp refactor - #1334

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BoundaryOp-refactor

Commits on Oct 21, 2018

Add Mesh::GlobalZ methods for consistency with GlobalX, GlobalY
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9124368
Add Mesh* pointer to FieldData
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ff40d33
Make FieldData() backward compatible, no virtual on getDataMesh()
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2f80b55
Move FieldData::fielddatamesh init into init list

ZedThree
authored and
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ed76776
Check Mesh*'s are the same in Field3D operator=(Field2D)
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95e2ff2
Copy or check fielddatamesh in Field3D/Field2D operator=
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c6adde3
Check consistency of fieldmesh and fielddatamesh
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e851da6
Move mesh checks after allocate()
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ea904ba
Set fielddatamesh in Field2D/Field3D::allocate()
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8a07c7e
Refactor boundary conditions code
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af75612
Add 4th and 5th order extrapolation boundary conditions
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5fe8d3a
Utility funcs for 2nd-5th order extrapolation in boundary_standard.cxx
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20b6973
Rename BoundaryDirichlet_4thOrder to BoundaryDirichlet_O5
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d40cd41
Make 'Robin' boundary condition inputs independent of grid spacing
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a0c85de
Add optional region argument to boutcore.Field*D.applyBoundary()
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5e23d20
Test boundary conditions in MMS/derivatives3
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e65ea0d
Add BoundaryDirichet_smooth
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4d6a7e7
Swap boundary conditions and test staggergrids=false in wave-1d
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3cdb964
Test StaggerGrids=false and both dirichlet_smooth/neumann in
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6e4de0f
Use dirichlet and neumann in MMS/diffusion
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cf7aa24

Commits on Oct 22, 2018

Throw exceptions with helpful error messages.
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9f09ab8
Remove redundant template arguments
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9cde433

Commits on Oct 29, 2018

Suggest using 'auto' in boundary_factory.hxx docstring example code
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febbe8e
Rename extrap* -> extrapolate*
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efb75e8
Make sure chains of conditionals use 'else if'
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ed6ff04
Check bx and by are consistent in BoundaryRegion constructor
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205bc00
Check boundary region exists in verifyNumPoints at standard CHECK level
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5cb1be4
Reduce code duplication in Boundary*::clone methods
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f6feea4

Commits on Oct 31, 2018

Commits on Nov 12, 2018

Example to time application of boundary conditions
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b248225
Implement CRTP pattern for BoundaryOpWithApply
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a383869
Pass (BoutReal) grid spacing instead of Coordinates*
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3c0c6a3
Speed up BoundaryOps
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5fcc7df
clang-format, remove commented-out code
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9e16181
Fix implementation of 'width' in boundary conditions, use BoundaryWidth
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34a39b0
Clear existing boundaries in FieldData::setBoundary()
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1f588a4
Store BoundaryRegion's and BoundarRegionPar's in unique_ptr's
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2e17480
Implement FieldData::setBoundary(region, op)
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ee22ccf

Commits on Dec 5, 2018