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Burn down pyright diagnostics in pipe/_find_features.py via honest private-helper signatures
prio:2ImportantImportanttopic:infraRelease, CI, packaging, tooling and repo infrastructureRelease, CI, packaging, tooling and repo infrastructuretype:featureImplementation of featureImplementation of featureStatus: Open.#505 In breimanntools/aaanalysis;epic: v2 unified architecture (TaskSpec/DataSpec, typed result objects, namespaces, migration tooling)
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Add cross-modal explanation alignment (CPP / PLM / structure / conservation)
prio:3Still importantStill importanttopic:XAIExplainability methods integrated into AAanalysisExplainability methods integrated into AAanalysistype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Add an experimental-feedback result schema (predicted candidate to assay outcome)
prio:3Still importantStill importanttopic:dataData related improvementsData related improvementstype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Add a scientific lineage graph (dataset to features to model to explanation to design)
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Add dataset-shift / drift diagnostics (reference vs target distributions)
prio:3Still importantStill importanttopic:coreCore featuresCore featurestype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Add an optional-dependency compatibility matrix in CI
prio:3Still importantStill importanttopic:infraRelease, CI, packaging, tooling and repo infrastructureRelease, CI, packaging, tooling and repo infrastructuretype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Add provenance-aware local caching / checkpoints for expensive computation
prio:3Still importantStill importanttopic:performancePerformance improvementsPerformance improvementstype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Add sparse / backed matrix support for omics-scale inputs
prio:3Still importantStill importanttopic:performancePerformance improvementsPerformance improvementstype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Add a single-cell to protein aggregation bridge (thin scverse consumer)
prio:3Still importantStill importanttopic:dataData related improvementsData related improvementstype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Add a proteomics matrix / long-table adapter (consumes processed outputs)
prio:3Still importantStill importanttopic:dataData related improvementsData related improvementstype:featureImplementation of featureImplementation of featureStatus: Open.[Potential] Preserve assay / batch / missingness metadata through omics adapters
prio:3Still importantStill importanttopic:dataData related improvementsData related improvementstype:featureImplementation of featureImplementation of featureStatus: Open.