singularity-recipes

A collection of Singularity recipes useful for our nextflow pipelines

To build containers locally in ../images, do: ./build_containers.sh

Name		Name	Last commit message	Last commit date
scripts		scripts
.listing		.listing
README.md		README.md
Singularity.abricate		Singularity.abricate
Singularity.ariba		Singularity.ariba
Singularity.assembly_improvement		Singularity.assembly_improvement
Singularity.bbtools		Singularity.bbtools
Singularity.canu		Singularity.canu
Singularity.cd-hit		Singularity.cd-hit
Singularity.centrifuge		Singularity.centrifuge
Singularity.deeptools		Singularity.deeptools
Singularity.interop		Singularity.interop
Singularity.iqtree		Singularity.iqtree
Singularity.iva		Singularity.iva
Singularity.kraken2		Singularity.kraken2
Singularity.kronatools		Singularity.kronatools
Singularity.mash		Singularity.mash
Singularity.minimap2		Singularity.minimap2
Singularity.mlst		Singularity.mlst
Singularity.multiqc		Singularity.multiqc
Singularity.mykrobe-atlas		Singularity.mykrobe-atlas
Singularity.pengu-ddt		Singularity.pengu-ddt
Singularity.prokka		Singularity.prokka
Singularity.quast		Singularity.quast
Singularity.rtg		Singularity.rtg
Singularity.seqtk		Singularity.seqtk
Singularity.shiver		Singularity.shiver
Singularity.shiver_init		Singularity.shiver_init
Singularity.shovill		Singularity.shovill
Singularity.sierrapy		Singularity.sierrapy
Singularity.snapperdb		Singularity.snapperdb
Singularity.snapperdb_v3		Singularity.snapperdb_v3
Singularity.taxonkit		Singularity.taxonkit
Singularity.trim_galore		Singularity.trim_galore
Singularity.variant_calling		Singularity.variant_calling
Singularity.vsearch		Singularity.vsearch
Singularity.wtdbg2		Singularity.wtdbg2
build_containers.sh		build_containers.sh

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