StringKernel4LIBSVM

This codes is to transform Amino Acid Sequences to precomputed Weighted Degree String Kernel (WDSK) for LIBSVM.

Usage:

-k : maximum k-mer is calculated

-train: specify train_file, if no test_file, output transformed train_file

-test: specify test_file, need referenced train file

Name		Name	Last commit message	Last commit date
Latest commit History 5 Commits
.gitignore		.gitignore
GetLongOpt.cpp		GetLongOpt.cpp
GetLongOpt.h		GetLongOpt.h
README.md		README.md
StringKernelConverter.cpp		StringKernelConverter.cpp
StringKernels.cpp		StringKernels.cpp
StringKernels.h		StringKernels.h
data.txt		data.txt
sample.bat		sample.bat
svmsk_analyser.cpp		svmsk_analyser.cpp
test_data.txt		test_data.txt