ci: harden doctor step PATH to include /usr/local/bin:/usr/bin:/bin; …

.coveragerc

@@ -0,0 +1,23 @@
+[run]
+relative_files = True
+parallel = True
+omit =
+    */site-packages/*
+    */tests/*
+    */.venv/*
+    */venv/*
+    */.tox/*
+
+[paths]
+source =
+    src
+    */workspace/*/src
+    */project/*/src
+    */Users/*/Projects/SAMO--GENERAL/SAMO--DL/src
+
+[report]
+show_missing = True
+skip_covered = True
+exclude_lines =
+    pragma: no cover
+    if __name__ == "__main__":

ci_pipeline.log

@@ -2076,3 +2076,187 @@ ERROR:__main__:💥 Some Whisper transcription tests failed!
 2025-08-06 10:16:29,574 - INFO - 📊 Generating CI Report
 2025-08-06 10:16:29,574 - INFO - ============================================================
 2025-08-06 10:16:29,575 - INFO - 🎉 CI Pipeline completed successfully!
+2025-08-09 22:42:37,553 - INFO - 🚀 Starting Comprehensive CI Pipeline
+2025-08-09 22:42:37,553 - INFO - ============================================================
+2025-08-09 22:42:37,553 - INFO - 🔍 Detecting environment...
+2025-08-09 22:42:37,554 - WARNING - ⚠️ PyTorch not available for GPU detection
+2025-08-09 22:42:37,554 - INFO - 💻 Running in local environment
+2025-08-09 22:42:37,554 - INFO - 📊 Environment: {'platform': 'linux', 'python_version': '3.13.3 (main, Apr  8 2025, 19:55:40) [GCC 14.2.0]', 'is_colab': False, 'gpu_available': False, 'conda_env': 'unknown'}
+2025-08-09 22:42:37,554 - INFO - 📦 Validating dependencies...
+2025-08-09 22:42:37,554 - ERROR - ❌ torch missing
+2025-08-09 22:42:37,554 - ERROR - ❌ transformers missing
+2025-08-09 22:42:37,554 - ERROR - ❌ fastapi missing
+2025-08-09 22:42:37,554 - ERROR - ❌ pydantic missing
+2025-08-09 22:42:37,554 - ERROR - ❌ datasets missing
+2025-08-09 22:42:37,554 - ERROR - ❌ tokenizers missing
+2025-08-09 22:42:37,554 - ERROR - ❌ numpy missing
+2025-08-09 22:42:37,554 - ERROR - ❌ pandas missing
+2025-08-09 22:42:37,554 - ERROR - ❌ Missing packages: ['torch', 'transformers', 'fastapi', 'pydantic', 'datasets', 'tokenizers', 'numpy', 'pandas']
+2025-08-09 22:42:37,554 - INFO - 🚀 Running scripts/ci/api_health_check.py...
+2025-08-09 22:42:37,602 - ERROR - ❌ scripts/ci/api_health_check.py FAILED
+2025-08-09 22:42:37,602 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/api_health_check.py", line 18, in <module>
+    from pydantic import BaseModel, ValidationError, Field
+ModuleNotFoundError: No module named 'pydantic'
+
+2025-08-09 22:42:37,602 - ERROR - ❌ api_health_check failed, but continuing...
+2025-08-09 22:42:37,602 - INFO - 🚀 Running scripts/ci/bert_model_test.py...
+2025-08-09 22:42:37,628 - ERROR - ❌ scripts/ci/bert_model_test.py FAILED
+2025-08-09 22:42:37,628 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/bert_model_test.py", line 11, in <module>
+    import torch
+ModuleNotFoundError: No module named 'torch'
+
+2025-08-09 22:42:37,628 - ERROR - ❌ bert_model_test failed, but continuing...
+2025-08-09 22:42:37,628 - INFO - 🚀 Running scripts/ci/t5_summarization_test.py...
+2025-08-09 22:42:37,657 - ERROR - ❌ scripts/ci/t5_summarization_test.py FAILED
+2025-08-09 22:42:37,657 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/t5_summarization_test.py", line 18, in <module>
+    from models.summarization.t5_summarizer import create_t5_summarizer
+  File "/workspace/src/models/summarization/__init__.py", line 19, in <module>
+    from .dataset_loader import SummarizationDataset, create_summarization_loader
+  File "/workspace/src/models/summarization/dataset_loader.py", line 2, in <module>
+    from torch.utils.data import Dataset
+ModuleNotFoundError: No module named 'torch'
+
+During handling of the above exception, another exception occurred:
+
+Traceback (most recent call last):
+  File "/workspace/scripts/ci/t5_summarization_test.py", line 21, in <module>
+    from src.models.summarization.t5_summarizer import create_t5_summarizer
+ModuleNotFoundError: No module named 'src'
+
+2025-08-09 22:42:37,657 - ERROR - ❌ t5_summarization_test failed, but continuing...
+2025-08-09 22:42:37,657 - INFO - 🚀 Running scripts/ci/whisper_transcription_test.py...
+2025-08-09 22:42:37,680 - ERROR - ❌ scripts/ci/whisper_transcription_test.py FAILED
+2025-08-09 22:42:37,680 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/whisper_transcription_test.py", line 11, in <module>
+    import numpy as np
+ModuleNotFoundError: No module named 'numpy'
+
+2025-08-09 22:42:37,680 - ERROR - ❌ whisper_transcription_test failed, but continuing...
+2025-08-09 22:42:37,680 - INFO - 🚀 Running scripts/ci/model_calibration_test.py...
+2025-08-09 22:42:37,707 - ERROR - ❌ scripts/ci/model_calibration_test.py FAILED
+2025-08-09 22:42:37,708 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/model_calibration_test.py", line 18, in <module>
+    import torch
+ModuleNotFoundError: No module named 'torch'
+
+2025-08-09 22:42:37,708 - ERROR - ❌ model_calibration_test failed, but continuing...
+2025-08-09 22:42:37,708 - INFO - 🚀 Running scripts/ci/onnx_conversion_test.py...
+2025-08-09 22:42:37,730 - ERROR - ❌ scripts/ci/onnx_conversion_test.py FAILED
+2025-08-09 22:42:37,730 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/onnx_conversion_test.py", line 10, in <module>
+    import numpy as np
+ModuleNotFoundError: No module named 'numpy'
+
+2025-08-09 22:42:37,730 - ERROR - ❌ onnx_conversion_test failed, but continuing...
+2025-08-09 22:42:37,730 - INFO - 🧪 Running unit tests...
+2025-08-09 22:42:37,740 - ERROR - ❌ Unit tests FAILED
+2025-08-09 22:42:37,740 - ERROR - Return code: 1
+2025-08-09 22:42:37,740 - ERROR - Error output: /usr/bin/python3: No module named pytest
+
+2025-08-09 22:42:37,740 - ERROR - Standard output: 
+2025-08-09 22:42:37,740 - INFO - 🎯 Running E2E tests...
+2025-08-09 22:42:37,749 - ERROR - ❌ E2E tests FAILED
+2025-08-09 22:42:37,749 - ERROR - Error output: /usr/bin/python3: No module named pytest
+
+2025-08-09 22:42:37,749 - INFO - 🖥️ Testing GPU compatibility...
+2025-08-09 22:42:37,749 - ERROR - ❌ GPU compatibility test failed: No module named 'torch'
+2025-08-09 22:42:37,749 - INFO - ⚡ Running performance benchmarks...
+2025-08-09 22:42:37,749 - ERROR - ❌ Performance benchmark failed: No module named 'torch'
+2025-08-09 22:42:37,749 - INFO - 📊 Generating CI Report
+2025-08-09 22:42:37,749 - INFO - ============================================================
+2025-08-09 22:42:37,749 - ERROR - ❌ CI Pipeline failed!
+2025-08-09 22:47:39,247 - INFO - 🚀 Starting Comprehensive CI Pipeline
+2025-08-09 22:47:39,247 - INFO - ============================================================
+2025-08-09 22:47:39,247 - INFO - 🔍 Detecting environment...
+2025-08-09 22:47:39,248 - WARNING - ⚠️ PyTorch not available for GPU detection
+2025-08-09 22:47:39,248 - INFO - 💻 Running in local environment
+2025-08-09 22:47:39,248 - INFO - 📊 Environment: {'platform': 'linux', 'python_version': '3.13.3 (main, Apr  8 2025, 19:55:40) [GCC 14.2.0]', 'is_colab': False, 'gpu_available': False, 'conda_env': 'unknown'}
+2025-08-09 22:47:39,248 - INFO - 📦 Validating dependencies...
+2025-08-09 22:47:39,248 - ERROR - ❌ torch missing
+2025-08-09 22:47:39,248 - ERROR - ❌ transformers missing
+2025-08-09 22:47:39,248 - ERROR - ❌ fastapi missing
+2025-08-09 22:47:39,248 - ERROR - ❌ pydantic missing
+2025-08-09 22:47:39,248 - ERROR - ❌ datasets missing
+2025-08-09 22:47:39,248 - ERROR - ❌ tokenizers missing
+2025-08-09 22:47:39,248 - ERROR - ❌ numpy missing
+2025-08-09 22:47:39,248 - ERROR - ❌ pandas missing
+2025-08-09 22:47:39,248 - ERROR - ❌ Missing packages: ['torch', 'transformers', 'fastapi', 'pydantic', 'datasets', 'tokenizers', 'numpy', 'pandas']
+2025-08-09 22:47:39,248 - INFO - 🚀 Running scripts/ci/api_health_check.py...
+2025-08-09 22:47:39,286 - ERROR - ❌ scripts/ci/api_health_check.py FAILED
+2025-08-09 22:47:39,286 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/api_health_check.py", line 18, in <module>
+    from pydantic import BaseModel, ValidationError, Field
+ModuleNotFoundError: No module named 'pydantic'
+
+2025-08-09 22:47:39,286 - ERROR - ❌ api_health_check failed, but continuing...
+2025-08-09 22:47:39,286 - INFO - 🚀 Running scripts/ci/bert_model_test.py...
+2025-08-09 22:47:39,309 - ERROR - ❌ scripts/ci/bert_model_test.py FAILED
+2025-08-09 22:47:39,309 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/bert_model_test.py", line 11, in <module>
+    import torch
+ModuleNotFoundError: No module named 'torch'
+
+2025-08-09 22:47:39,309 - ERROR - ❌ bert_model_test failed, but continuing...
+2025-08-09 22:47:39,309 - INFO - 🚀 Running scripts/ci/t5_summarization_test.py...
+2025-08-09 22:47:39,343 - ERROR - ❌ scripts/ci/t5_summarization_test.py FAILED
+2025-08-09 22:47:39,343 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/t5_summarization_test.py", line 18, in <module>
+    from models.summarization.t5_summarizer import create_t5_summarizer
+  File "/workspace/src/models/summarization/__init__.py", line 19, in <module>
+    from .dataset_loader import SummarizationDataset, create_summarization_loader
+  File "/workspace/src/models/summarization/dataset_loader.py", line 2, in <module>
+    from torch.utils.data import Dataset
+ModuleNotFoundError: No module named 'torch'
+
+During handling of the above exception, another exception occurred:
+
+Traceback (most recent call last):
+  File "/workspace/scripts/ci/t5_summarization_test.py", line 21, in <module>
+    from src.models.summarization.t5_summarizer import create_t5_summarizer
+ModuleNotFoundError: No module named 'src'
+
+2025-08-09 22:47:39,343 - ERROR - ❌ t5_summarization_test failed, but continuing...
+2025-08-09 22:47:39,343 - INFO - 🚀 Running scripts/ci/whisper_transcription_test.py...
+2025-08-09 22:47:39,365 - ERROR - ❌ scripts/ci/whisper_transcription_test.py FAILED
+2025-08-09 22:47:39,366 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/whisper_transcription_test.py", line 11, in <module>
+    import numpy as np
+ModuleNotFoundError: No module named 'numpy'
+
+2025-08-09 22:47:39,366 - ERROR - ❌ whisper_transcription_test failed, but continuing...
+2025-08-09 22:47:39,366 - INFO - 🚀 Running scripts/ci/model_calibration_test.py...
+2025-08-09 22:47:39,392 - ERROR - ❌ scripts/ci/model_calibration_test.py FAILED
+2025-08-09 22:47:39,392 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/model_calibration_test.py", line 18, in <module>
+    import torch
+ModuleNotFoundError: No module named 'torch'
+
+2025-08-09 22:47:39,392 - ERROR - ❌ model_calibration_test failed, but continuing...
+2025-08-09 22:47:39,392 - INFO - 🚀 Running scripts/ci/onnx_conversion_test.py...
+2025-08-09 22:47:39,420 - ERROR - ❌ scripts/ci/onnx_conversion_test.py FAILED
+2025-08-09 22:47:39,420 - ERROR - Error output: Traceback (most recent call last):
+  File "/workspace/scripts/ci/onnx_conversion_test.py", line 10, in <module>
+    import numpy as np
+ModuleNotFoundError: No module named 'numpy'
+
+2025-08-09 22:47:39,420 - ERROR - ❌ onnx_conversion_test failed, but continuing...
+2025-08-09 22:47:39,420 - INFO - 🧪 Running unit tests...
+2025-08-09 22:47:39,429 - ERROR - ❌ Unit tests FAILED
+2025-08-09 22:47:39,429 - ERROR - Return code: 1
+2025-08-09 22:47:39,429 - ERROR - Error output: /usr/bin/python3: No module named pytest
+
+2025-08-09 22:47:39,429 - ERROR - Standard output: 
+2025-08-09 22:47:39,429 - INFO - 🎯 Running E2E tests...
+2025-08-09 22:47:39,438 - ERROR - ❌ E2E tests FAILED
+2025-08-09 22:47:39,438 - ERROR - Error output: /usr/bin/python3: No module named pytest
+
+2025-08-09 22:47:39,438 - INFO - 🖥️ Testing GPU compatibility...
+2025-08-09 22:47:39,438 - ERROR - ❌ GPU compatibility test failed: No module named 'torch'
+2025-08-09 22:47:39,438 - INFO - ⚡ Running performance benchmarks...
+2025-08-09 22:47:39,438 - ERROR - ❌ Performance benchmark failed: No module named 'torch'
+2025-08-09 22:47:39,438 - INFO - 📊 Generating CI Report
+2025-08-09 22:47:39,438 - INFO - ============================================================
+2025-08-09 22:47:39,438 - ERROR - ❌ CI Pipeline failed!

ci_pipeline_report.txt

@@ -3,27 +3,27 @@
 ============================================================
 
 📊 SUMMARY:
-- Total Tests: 12
-- Passed: 11
-- Failed: 1
-- Success Rate: 91.7%
+- Total Tests: 11
+- Passed: 0
+- Failed: 11
+- Success Rate: 0.0%
 
 🔍 DETAILED RESULTS:
-- environment: {'platform': 'darwin', 'python_version': '3.8.6rc1 (v3.8.6rc1:08bd63da6e, Sep  7 2020, 16:14:12) \n[Clang 6.0 (clang-600.0.57)]', 'is_colab': False, 'gpu_available': False, 'conda_env': 'base'}
-- dependencies: ✅ PASSED
-- api_health_check: ✅ PASSED
-- bert_model_test: ✅ PASSED
-- t5_summarization_test: ✅ PASSED
-- whisper_transcription_test: ✅ PASSED
-- model_calibration_test: ✅ PASSED
-- onnx_conversion_test: ✅ PASSED
-- unit_tests: ✅ PASSED
-- e2e_tests: ✅ PASSED
-- gpu_compatibility: ✅ PASSED
-- performance: ✅ PASSED
+- environment: {'platform': 'linux', 'python_version': '3.13.3 (main, Apr  8 2025, 19:55:40) [GCC 14.2.0]', 'is_colab': False, 'gpu_available': False, 'conda_env': 'unknown'}
+- dependencies: ❌ FAILED
+- api_health_check: ❌ FAILED
+- bert_model_test: ❌ FAILED
+- t5_summarization_test: ❌ FAILED
+- whisper_transcription_test: ❌ FAILED
+- model_calibration_test: ❌ FAILED
+- onnx_conversion_test: ❌ FAILED
+- unit_tests: ❌ FAILED
+- e2e_tests: ❌ FAILED
+- gpu_compatibility: ❌ FAILED
+- performance: ❌ FAILED
 
-⏱️ EXECUTION TIME: 34.5s
+⏱️ EXECUTION TIME: 0.2s
 
 🎯 RECOMMENDATIONS:
-⚠️ Failed tests: 
+⚠️ Failed tests: dependencies, api_health_check, bert_model_test, t5_summarization_test, whisper_transcription_test, model_calibration_test, onnx_conversion_test, unit_tests, e2e_tests, gpu_compatibility, performance
 🔧 Please fix the failed tests before deployment.