deGrootLab
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pmx
pmx PublicForked from dseeliger/pmx
Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
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abs_dG_paper_ChemScience2021
abs_dG_paper_ChemScience2021 Publicstructures and data for https://doi.org/10.1039/D1SC03472C
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rel_ddG_MerckDataSet_JCIM
rel_ddG_MerckDataSet_JCIM PublicRelative free energy calculation data for the Merck protein-ligand set
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Charge_Scaling_in_Potassium_Channel_Simulations_paper
Charge_Scaling_in_Potassium_Channel_Simulations_paper PublicForce field and structure file used in Charge Scaling in Potassium Channel Simulations: Conductance, Ion Occupancy, Voltage Response, and Selectivity
Repositories
- pmx Public Forked from dseeliger/pmx
Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
- pmx_tutorials_inputs Public
- pka_reparam_2025 Public
data and ff params for: "Improving pKa prediction accuracy with reparametrized force fields and free energy calculations"
- aquaporin_3_2025 Public
- abcg2_evaluation Public
- public_benchmark2025 Public
- Charge_Scaling_in_Potassium_Channel_Simulations_paper Public
Force field and structure file used in Charge Scaling in Potassium Channel Simulations: Conductance, Ion Occupancy, Voltage Response, and Selectivity
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