Perl to Python - #235
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Jeevesh28
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Replace the main Perl drivers with Python 3: rsem-prepare-reference, rsem-calculate-expression, convert-sam-for-rsem, extract-transcript-to-gene-map-from-trinity, rsem-generate-ngvector, rsem-run-ebseq, rsem-control-fdr, rsem-generate-data-matrix, rsem-plot-transcript-wiggles, and rsem-run-prsem-testing-procedure. Add rsem_utils.py as the shared helper module (including Perl-compatible drand48 seeds for --calc-ci). Install rsem_utils.py via Makefile; C++ and R tools are unchanged.
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Migration: