Persistent Exclusion Process

This is a Python and C implementation of the persistent exclusion process (see Sepulveda and Soto PRL 2017), using ctypes.

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Installation

On cluster (BLUEPEBLLE)

# Clone onto machine
git clone https://github.com/dlactivematter/persistent-exclusion-process
cd persistent-exclusion-process

# Prepare local environment
mkdir data
source .env_bp

# Compile the lattice ctype
cd src/c
make

In the folder src one can find all the Python scripts.

Generating dataset

python3 sampler.py --density <DENSITY>

Add the flag --odd to produce the odd set of tumbling rate. Run both with and without the flag to generate the full dataset.