- Necessary Resources
1.1 Hardware
Workstation running any current OS, Unix environment recommended
1.2 Software
- R package (http://www.r-project.org)
- R packages: getopt, optparse, reshape2, pheatmap, RcolorBrewer, ggplot2, MESS, yaml
- MiST source code (https://github.com/everschueren/MiST)
- Git (optional) (http://git-scm.com)
- Installation
- Download the MiST package as a .zip archive from the public GitHub repository by clicking on the “Download ZIP” button on the bottom right, unzip the files and
- move the directory to a permanent location.
- Alternatively, you can check out the MiST package through Git as follows:
- git clone https://github.com/everschueren/MiST.git MiST
- The MiST pipeline is designed to run from a terminal using R. This requires the user to have executable permissions. To set these permissions in a Unix environment, navigate in the terminal to the MiST directory, hereafter referred to as the $INSTALL_DIR, then type: sudo chmod -R 775 *