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Writing Paper (JOSS) - #188

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Writing Paper (JOSS)#188
JensKrumsieck wants to merge 45 commits into
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paper/joss

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@JensKrumsieck

@JensKrumsieck JensKrumsieck commented Oct 29, 2025

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Commit and/or merge changes to the paper to this branch

Invite people for proof read if their products products: Middleware, Search, ARCs, ... are mentioned in a way we need an approval.

When draft is ready spread into TA4 at least BEFORE publishing!

This PR is used for communication and CI Builds, it may never will be merged to master!

@fairagro fairagro deleted a comment from github-actions Bot Oct 29, 2025
Comment thread .github/workflows/draft-pdf.yml Fixed
@fairagro fairagro deleted a comment from github-actions Bot Oct 29, 2025
@JensKrumsieck

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This has fallen behind somehow.

@JensKrumsieck

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Comment thread paper/paper.md

# Research impact statement
SciWIn-Client adresses a critical gap in open and reproducible science: The gap between the complexicty of formal workflow standards and the practical capabilities of reserachers. By automating CWL generation directly from command-line interactions, it enables scientists, regardless of their software engineering background, to produce structured, version-controlled, and portable workflow definitions without manual authoring of verbose specifications.
Within the FAIRagro-consortium[@Ewert2023Proposal], SciWIn-Client directly supports the FAIR principles for data by ensuring that computational processes in agricultural research are FAIR compliant by using a defined standard. Workflows produced by SciWIn-Client are natively compatible with the ARC format [@dataplant2025ARCSpec; @Weil2023PLANTdataHUB], enabling seamless integration with DataPLANT's research data management infrastructure, and can be exported as Workflow Run RO-Crates [@Leo2024WRRC], providing machine-readable provenance records for every execution.

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"SciWIn-Client directly supports the FAIR principles for data by ensuring that computational processes in
agricultural research are FAIR compliant" can be motivated more strongly by emphasizing how SciWIn helps converting god scripts/script collections into reproducible workflows with ease instead. "using a defined standard" seems more like a plus, but not the main argument.

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