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1. hicognition hicognition Public

   A visual exploration and hypothesis testing tool for 3D genomics

   Python 13 2

2. scshic_analysis scshic_analysis Public

   Contains notebooks that analyse scsHi-C data and create the scsHi-C paper figures.

   Jupyter Notebook 10

3. scshic_pipeline scshic_pipeline Public

   scsHi-C preprocessing Nextflow pipeline

   Groovy 5

4. scshic_docker scshic_docker Public

   Container with tools to analyse scsHi-C data.

   Dockerfile 1

5. ngs ngs Public

   A collections of functions to facilitate analysis of HiC data based on the cooler and cooltools interfaces.

   Python 6

6. gertils gertils Public

   general GERlich group uTILitieS

   Python 2 1