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af.template.dir
af.template.dir
 
 
countSARS2Leaders
countSARS2Leaders
 
 
data
data
 
 
notebooks
notebooks
 
 
saintDocker
saintDocker
 
 
AF3.R
AF3.R
 
 
APMS_Bait_Convergence.R
APMS_Bait_Convergence.R
 
 
APMS_Utils.R
APMS_Utils.R
 
 
APMS_scores.R
APMS_scores.R
 
 
ClusteredHeatmapWithLineChartExample.R
ClusteredHeatmapWithLineChartExample.R
 
 
CompleteCaseNormalize.R
CompleteCaseNormalize.R
 
 
CompositeLocationsAPEX.R
CompositeLocationsAPEX.R
 
 
ConvergenceInBaitPreySets.R
ConvergenceInBaitPreySets.R
 
 
CorrelationScatterPlots.R
CorrelationScatterPlots.R
 
 
EvidenceFile2MSstatsInput.R
EvidenceFile2MSstatsInput.R
 
 
FixTIMSEvidence.R
FixTIMSEvidence.R
 
 
FragPipe2MSstats.usage.R
FragPipe2MSstats.usage.R
 
 
HumanToMo_nkey_usePHSite.R
HumanToMo_nkey_usePHSite.R
 
 
IntroducingDataTableManipulations.Rmd
IntroducingDataTableManipulations.Rmd
 
 
IntroducingDataTableManipulations.html
IntroducingDataTableManipulations.html
 
 
Isoforms.R
Isoforms.R
 
 
KEGG_API.R
KEGG_API.R
 
 
KinaseActivityScores.R
KinaseActivityScores.R
 
 
LICENSE
LICENSE
 
 
LinearModels.R
LinearModels.R
 
 
Localization_CellMap.R
Localization_CellMap.R
 
 
LocatePeptidePtmInProteins.R
LocatePeptidePtmInProteins.R
 
 
MS_ModelFitting_TimeSeries.R
MS_ModelFitting_TimeSeries.R
 
 
MSstats_Helper_Functions.R
MSstats_Helper_Functions.R
 
 
MSstats_V4_Functions.R
MSstats_V4_Functions.R
 
 
ManageScriptData.R
ManageScriptData.R
 
 
NMF_Helpers.R
NMF_Helpers.R
 
 
NetworkModularization.R
NetworkModularization.R
 
 
NetworkPropagation.R
NetworkPropagation.R
 
 
NetworkPropagation_Build_S_matrix.diffusion.py
NetworkPropagation_Build_S_matrix.diffusion.py
 
 
NetworkPropagation_Build_S_matrix.py
NetworkPropagation_Build_S_matrix.py
 
 
Normalization.R
Normalization.R
 
 
OrphanBitsOfCode.R
OrphanBitsOfCode.R
 
 
OrthologousPhosphoSiteConverter.R
OrthologousPhosphoSiteConverter.R
 
 
OrthologsInBioMart.Rmd
OrthologsInBioMart.Rmd
 
 
PH_Motif_Analysis.R
PH_Motif_Analysis.R
 
 
PPINetworkModularized.R
PPINetworkModularized.R
 
 
ProteinCoverageInteractive.Rmd
ProteinCoverageInteractive.Rmd
 
 
README.md
README.md
 
 
SEC_MS_utils.R
SEC_MS_utils.R
 
 
STRING_db_utils.R
STRING_db_utils.R
 
 
SaintExpressR.R
SaintExpressR.R
 
 
StringSMatrix.HeatDiffuse.py
StringSMatrix.HeatDiffuse.py
 
 
UniprotIDMapping.R
UniprotIDMapping.R
 
 
enrichmentTestFunctions.R
enrichmentTestFunctions.R
 
 
spectronautFile2ArtMS.R
spectronautFile2ArtMS.R
 
 
usage.spectronaut2ArtMS.R
usage.spectronaut2ArtMS.R
 
 

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bp_utils

A collection of scripts/source files that may be useful to others

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A collection of scripts/source files that may be useful to others

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