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Pull requests: loculus-project/loculus
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chore(deps): bump postcss from 8.5.16 to 8.5.24 in /keycloak/keycloakify
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#7004
opened Jul 29, 2026 by
dependabot
Bot
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chore(deps): bump brace-expansion from 2.1.2 to 2.1.3 in /keycloak/keycloakify
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#7002
opened Jul 29, 2026 by
dependabot
Bot
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feat(file-processing): prevent submission of interleaved fastq files
backend
related to the loculus backend component
deployment
Code changes targetting the deployment infrastructure
preprocessing
Issues related to the preprocessing component
website
Tasks related to the web application
#7001
opened Jul 28, 2026 by
anna-parker
Contributor
•
Draft
3 tasks
fix(auth): harden OIDC login flow and redirect handling
deployment
Code changes targetting the deployment infrastructure
preview
Triggers a deployment to argocd
website
Tasks related to the web application
#6994
opened Jul 27, 2026 by
snehasaisneha
Member
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feat(deposition): use foreign key constraints and use ORM with transactions and joins in more places
deposition
related to ENA/INSDC deposition
#6989
opened Jul 26, 2026 by
anna-parker
Contributor
•
Draft
3 tasks
feat!(config, prepro, file-processing): create new file-processing microservice which handles file validation
deployment
Code changes targetting the deployment infrastructure
preprocessing
Issues related to the preprocessing component
preview
Triggers a deployment to argocd
#6987
opened Jul 25, 2026 by
anna-parker
Contributor
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3 tasks done
fix(backend): display preprint servers in citations
backend
related to the loculus backend component
#6982
opened Jul 24, 2026 by
theosanderson
Member
•
Draft
feat(ingest): enrich mirrored GenBank metadata
#6981
opened Jul 24, 2026 by
theosanderson
Member
•
Draft
feat(prepro): refactor - split args into function args and entry-specific level, internally supplied context arguments which are now fully typed
preprocessing
Issues related to the preprocessing component
#6980
opened Jul 24, 2026 by
anna-parker
Contributor
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3 tasks
chore(backend): Upgrade spring boot from v3.5 to v4, exposed from v0.61 to v1
backend
related to the loculus backend component
feat(website): revise defaults to single-sequence form (bulk-first tabs, Preview tag)
preview
Triggers a deployment to argocd
#6973
opened Jul 23, 2026 by
theosanderson-agent
Collaborator
•
Draft
feat(website): default revision to the single sequence form
preview
Triggers a deployment to argocd
website
Tasks related to the web application
#6964
opened Jul 22, 2026 by
theosanderson-agent
Collaborator
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chore(deps-dev): bump eslint-plugin-astro from 1.7.0 to 3.0.1 in /website
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#6961
opened Jul 22, 2026 by
dependabot
Bot
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chore(deps): bump react-dom and @types/react-dom in /keycloak/keycloakify
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#6959
opened Jul 22, 2026 by
dependabot
Bot
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chore(deps): bump the minorandpatch group in /keycloak/keycloakify with 10 updates
dependencies
Pull requests that update a dependency file
javascript
Pull requests that update Javascript code
#6958
opened Jul 22, 2026 by
dependabot
Bot
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chore(deps): bump types-psycopg2 from 2.9.21.20251012 to 2.9.21.20260712 in /ena-submission
conda
Pull requests that update conda code
dependencies
Pull requests that update a dependency file
#6952
opened Jul 22, 2026 by
dependabot
Bot
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chore(deps): bump the minorandpatch group across 1 directory with 3 updates
conda
Pull requests that update conda code
dependencies
Pull requests that update a dependency file
#6950
opened Jul 22, 2026 by
dependabot
Bot
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chore(deps): bump the minorandpatch group in /ena-submission with 17 updates
conda
Pull requests that update conda code
dependencies
Pull requests that update a dependency file
#6951
opened Jul 22, 2026 by
dependabot
Bot
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feat(website): add a "Modify entries" menu and fix the search action row layout
website
Tasks related to the web application
#6938
opened Jul 21, 2026 by
theosanderson-agent
Collaborator
•
Draft
2 of 3 tasks
feat(prepro): conditional metadata field requirements
deployment
Code changes targetting the deployment infrastructure
preprocessing
Issues related to the preprocessing component
preview
Triggers a deployment to argocd
#6930
opened Jul 20, 2026 by
maverbiest
Contributor
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2 tasks done
fix(backend): spool released exports safely
backend
related to the loculus backend component
bug
Something isn't working
deployment
Code changes targetting the deployment infrastructure
performance
preview
Triggers a deployment to argocd
#6926
opened Jul 20, 2026 by
clonder
Contributor
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chore(deployment): richer diagnostics collection for e2e integration tests
#6921
opened Jul 16, 2026 by
corneliusroemer
Contributor
•
Draft
chore(e2e): deflake known rare console error about CORS policy
e2e
E2E test related
#6917
opened Jul 16, 2026 by
corneliusroemer
Contributor
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feat!(config, file-processing): add deacon to file-processing service
deployment
Code changes targetting the deployment infrastructure
preprocessing
Issues related to the preprocessing component
preview
Triggers a deployment to argocd
#6916
opened Jul 16, 2026 by
anna-parker
Contributor
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3 tasks done
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