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merge next-elimBE-new with MRI branch - #3

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maggul merged 2160 commits into
next_continuous_temporal_filterfrom
next-elimBE-new-mri
Sep 13, 2026
Merged

maggul merged 2160 commits into
next_continuous_temporal_filterfrom
next-elimBE-new-mri

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@maggul maggul commented Sep 4, 2026

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bendudson and others added 30 commits July 9, 2026 22:12
Implement some clang-tidy suggestions, use FakeMeshFixtureFCI for
tests with FCI parallel transform.
If the parallel transform is not FCI then parallel slices are not
calculated on assignment to Field3DParallel.
Makes the `floor` function lazy, so it can be inlined into template
expressions.
Bumps [astral-sh/setup-uv](https://github.com/astral-sh/setup-uv) from 5 to 7.
- [Release notes](https://github.com/astral-sh/setup-uv/releases)
- [Commits](astral-sh/setup-uv@v5...v7)

---
updated-dependencies:
- dependency-name: astral-sh/setup-uv
  dependency-version: '7'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Arithmetic operators now use the lazy `BinaryExpr` expressions.
Remove unnecessary data members that dublicate the Field3D::View base.
The vector should be assembled once after importing values.
Assembling twice with elimBE over-corrects the RHS.
row_indexes is free'd using HypreFree, so should be allocated using
HypreMalloc.
NVCC doesn't accept `Array<int, ArrayData<int>>` as `C<scalar>`
so treats ConvertContainer<Array...> as partially specialized.

This explicitly writes convertors for Array, Matrix and Tensor
containers.
fmt uses `begin` rather than `std::begin` so that NVCC
fails to find an overload for `char[]` literals.
Calls `Array::size()` that accesses a shared pointer to `ArrayData`.
Doesn't need to be a device function since called outside kernel.
- Remove default arguments for fv_ops specializations
- Use base class functions rather than partial overload
bendudson and others added 28 commits September 7, 2026 09:57
MeshFactory::create read mesh from data directory
Provides an error message if arkode_mri solver is requested but
BOUT++ was built with a version of SUNDIALS lower than 7.2.0
PhysicsModel now has fast and slow preconditioners, and
these can be called by the Arkode MRI solver.
Previous use of ARKStepGetNumRhsEvals is deprecated from SUNDIALS
7.2.0, replaced by ARKodeGetNumRhsEvals

https://github.com/LLNL/sundials/blob/main/CHANGELOG.md#deprecation-notices
Rather than calling `ARKodeGetCurrentStep` every rhs() call, only
call when the `getCurrentTimestep()` method is called.
When run_rhs is called (e.g. by CVODE), all rhs functions are
called (rhs_se, rhs_si, rhs_fe, rhs_fi), so all counters need to be
incremented.
Fix many includes
merge next-elimBE-new-mri-filter with next-elimBE-new-mri
@maggul
maggul marked this pull request as ready for review September 13, 2026 21:43
@maggul
maggul merged commit 588161d into next_continuous_temporal_filter Sep 13, 2026
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10 participants