Feature/alignment - #68

Open

buehlere wants to merge 90 commits into

feature/alignment

Commits on Apr 13, 2023

adding mskcc modules
buehlere
committed
a5af10e
adding test yaml for mskccprepnucleo
EricWilliam Buehler
committed
9edde93

Commits on Apr 20, 2023

name change
EricWilliam Buehler
committed
f07a6de
removing redundant channel
EricWilliam Buehler
committed
043bec3

Commits on Apr 27, 2023

re-doing first access subworkflow
EricWilliam Buehler
committed
a830c37

Commits on May 2, 2023

clean up old workflow, after re-name
EricWilliam Buehler
committed
6503b00

Commits on May 9, 2023

try fork syncing
EricWilliam Buehler
committed
db72d2c
Merge branch 'develop' into feature/extractumi
buehlere
authored
00fa7d7
experimenting with auto sync
EricWilliam Buehler
committed
fc28f6e
Merge branch 'feature/extractumi' of https://github.com/mskcc-omics-workflows/modules into feature/extractumi
EricWilliam Buehler
committed
d669e02
testing gitactions
EricWilliam Buehler
committed
7c9816d
gitactions test
EricWilliam Buehler
committed
228c772
Merge pull request #4 from nf-core/master
buehlere
authored
2d70a15
gitactions experiment
EricWilliam Buehler
committed
d612e60
Merge branch 'feature/extractumi' of https://github.com/mskcc-omics-workflows/modules into feature/extractumi
EricWilliam Buehler
committed
fde2b5d
trying to fix gitactions
EricWilliam Buehler
committed
a78e7ea
Create sync-fork.yml
buehlere
committed
06b27e0
Update sync-fork.yml
buehlere
committed
f2c759d
Update sync-fork.yml
buehlere
committed
7ff8837
Update sync-fork.yml
buehlere
committed
03ede3c
Merge branch 'master' of https://github.com/mskcc-omics-workflows/modules
buehlere
committed
37ad4bd
Update sync-fork.yml
buehlere
committed
879199a
Update sync-fork.yml
buehlere
committed
c21e35b
Update sync-fork.yml
buehlere
committed
cd09579
Update sync-fork.yml
buehlere
committed
31331e4
Merge branch 'master' into feature/extractumi
buehlere
committed
cf56e9b
remove output folders
buehlere
committed
9a1f635
adding base template
EricWilliam Buehler
committed
8ce9df3

Commits on May 10, 2023

Create sync-action.yml
buehlere
committed
e0c8587
Merge pull request #10 from nf-core/master
buehlere
authored
0877f99

Commits on May 11, 2023

Merge branch 'master' into feature/alignment
buehlere
committed
5eee44f

Commits on May 12, 2023

Merge pull request #11 from nf-core/master
buehlere
authored
6b5a9c2

Commits on May 13, 2023

Merge pull request #12 from nf-core/master
buehlere
authored
d65303a

Commits on May 15, 2023

Merge pull request #13 from nf-core/master
buehlere
authored
ff7519d

Commits on May 16, 2023

Merge pull request #14 from nf-core/master
buehlere
authored
ff6690a

Commits on May 17, 2023

Merge pull request #15 from nf-core/master
buehlere
authored
37ceaf0
working alignment example
EricWilliam Buehler
committed
05e1212
Merge branch 'master' into develop
buehlere
committed
4c663a3
Update sync-action.yml
buehlere
committed
7215646
Delete sync-fork.yml
buehlere
committed
ab7ba98
Merge pull request #16 from nf-core/master
buehlere
authored
13d45de
Update sync-action.yml
buehlere
committed
35baf68
Update sync-action.yml
buehlere
committed
f2f4e04
Revert "Merge pull request #16 from nf-core/master"
buehlere
committed
5912f29

Commits on May 18, 2023

Merge pull request #17 from nf-core/master
buehlere
authored
668223d
Update sync-action.yml
buehlere
committed
d3d728d
Merge pull request #20 from nf-core/master
buehlere
authored
1b166e5
Merge branch 'develop' into feature/alignment
buehlere
committed
744b72e

Commits on May 22, 2023

Merge pull request #23 from nf-core/master
buehlere
authored
98ecd46

Commits on May 23, 2023

Merge pull request #25 from nf-core/master
buehlere
authored
e3e34fa

Commits on May 24, 2023

Merge pull request #27 from nf-core/master
buehlere
authored
a49348f

Commits on May 25, 2023

Commits on May 26, 2023

Commits on May 27, 2023

Merge pull request #34 from nf-core/master
buehlere
authored
2c128f2

Commits on May 30, 2023

Merge pull request #36 from nf-core/master
buehlere
authored
2d80a5a

Commits on May 31, 2023

Merge pull request #38 from nf-core/master
buehlere
authored
c7e7c4e

Commits on Jun 1, 2023

Merge pull request #40 from nf-core/master
buehlere
authored
8485cc7

Commits on Jun 2, 2023

Merge pull request #42 from nf-core/master
buehlere
authored
365d9eb

Commits on Jun 3, 2023

Merge pull request #44 from nf-core/master
buehlere
authored
320b705

Commits on Jun 5, 2023

Merge pull request #46 from nf-core/master
buehlere
authored
0b85cd9

Commits on Jun 6, 2023

Merge pull request #48 from nf-core/master
buehlere
authored
84aa571

Commits on Jun 8, 2023

Commits on Jun 9, 2023

Merge pull request #52 from nf-core/master
buehlere
authored
579028c

Commits on Jun 10, 2023

Merge pull request #54 from nf-core/master
buehlere
authored
f1d34f7

Commits on Jun 13, 2023

Merge pull request #56 from nf-core/master
buehlere
authored
b4e4c01

Commits on Jun 22, 2023

Merge pull request #58 from nf-core/master
buehlere
authored
e640e59
Merge branch 'develop' into feature/alignment
buehlere
committed
79efdf9

Commits on Jun 26, 2023

adding bwa2 init
EricWilliam Buehler
committed
9c5e0b8

Commits on Jun 27, 2023

updating test
EricWilliam Buehler
committed
42c879b
updating how data is pulled for test
EricWilliam Buehler
committed
64cbb79

Commits on Jun 28, 2023

updating alignment, first version I'm expecting to work
EricWilliam Buehler
committed
3e727a0
remove dangling features
buehlere
committed
a102d07
Delete .gitmodules
buehlere
committed
ca2ab7e

Commits on Jul 6, 2023

fix formatting
buehlere
committed
8a12ed3
fixing test
EricWilliam Buehler
committed
772cb59
Merge branch 'feature/alignment' of https://github.com/mskcc-omics-workflows/modules into feature/alignment
EricWilliam Buehler
committed
ea145c8

Commits on Jul 18, 2023

fixing indexing
EricWilliam Buehler
committed
2b004a9
update testing
buehlere
committed
cff132b
Update main.nf
buehlere
committed
45accbd

Commits on Aug 9, 2023

undo bad syncing
buehlere
committed
10669ef
Merge branch 'develop' into feature/alignment
buehlere
committed
0c7c483
merge with develop
buehlere
committed
b11d933
Delete test_data_msk.config
buehlere
committed
a88f7ec
Update main.nf
buehlere
committed
93c3b3b
Update pytest_modules.yml
buehlere
committed
c1baf91