Migrate Modulector integration to SDK - #101
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Replaced direct Modulector HTTP calls with modulector-sdk wrappers in `MRNAService` and updated all related consumers (`api_service`, `biomarkers`, `molecules_details`, and assistant tools). Added dedicated SDK-backed methods for miRNA/methylation lookup, interactions, diseases, drugs, and code/site search, plus paginated response normalization and safer fallbacks. Also introduced `MODULECTOR_BASE_URL` settings, added `modulector-sdk` dependency, updated MCP server command args for BioMCP, and fixed a null-response edge case in biomarker gene lookup.
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Replaced direct Modulector HTTP calls with modulector-sdk wrappers in
MRNAServiceand updated all related consumers (api_service,biomarkers,molecules_details, and assistant tools). Added dedicated SDK-backed methods for miRNA/methylation lookup, interactions, diseases, drugs, and code/site search, plus paginated response normalization and safer fallbacks. Also introducedMODULECTOR_BASE_URLsettings, addedmodulector-sdkdependency, updated MCP server command args for BioMCP, and fixed a null-response edge case in biomarker gene lookup.