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Complete HGVS object handling cleanup in mappers.py and hgvs_utils.py - #870

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Peter-J-Freeman wants to merge 33 commits into
developfrom
regex_removal
Open

Complete HGVS object handling cleanup in mappers.py and hgvs_utils.py#870
Peter-J-Freeman wants to merge 33 commits into
developfrom
regex_removal

update image URL at the top of README

79d711b
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Codecov / codecov/project succeeded Sep 2, 2026 in 1s

84.98% (+2.46%) compared to e2036de

View this Pull Request on Codecov

84.98% (+2.46%) compared to e2036de

Details

Codecov Report

❌ Patch coverage is 87.28948% with 400 lines in your changes missing coverage. Please review.
✅ Project coverage is 84.98%. Comparing base (e2036de) to head (79d711b).
⚠️ Report is 1 commits behind head on develop.

Files with missing lines Patch % Lines
VariantFormatter/variantformatter.py 82.02% 78 Missing ⚠️
VariantValidator/modules/vvMixinCore.py 73.78% 70 Missing ⚠️
VariantValidator/modules/hgvs_utils.py 85.82% 37 Missing ⚠️
VariantFormatter/gapGenes.py 78.66% 32 Missing ⚠️
VariantFormatter/formatter.py 85.57% 29 Missing ⚠️
VariantValidator/modules/complex_descriptions.py 89.75% 25 Missing ⚠️
VariantValidator/modules/liftover.py 88.34% 24 Missing ⚠️
VariantValidator/modules/vvDatabase.py 87.01% 20 Missing ⚠️
VariantFormatter/simpleVariantFormatter.py 88.51% 17 Missing ⚠️
VariantValidator/modules/vvDBInit.py 87.12% 17 Missing ⚠️
... and 12 more
Additional details and impacted files 
@@             Coverage Diff             @@
##           develop     #870      +/-   ##
===========================================
+ Coverage    82.51%   84.98%   +2.46%     
===========================================
  Files           42       48       +6     
  Lines        13913    14741     +828     
===========================================
+ Hits         11481    12528    +1047     
+ Misses        2432     2213     -219

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