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deprecated-clonotype-browser
deprecated-clonotype-browser PublicClonotype Browser Block
TypeScript 4
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mixcr-shm-trees
mixcr-shm-trees PublicBuild somatic hypermutation (SHM) lineage trees from antibody repertoire sequencing data. Reconstruct clonal relationships between antibody sequences and visualize how B-cell receptor (BCR) clones …
Vue 3
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deprecated-mixcr-clonotyping
deprecated-mixcr-clonotyping PublicMiXCR Clonotyping Block
TypeScript 2
Repositories
- clonotype-clustering Public
Groups similar sequences (clonotypes or peptides) into clusters based on similarity using MMseqs2.
- antibody-tcr-lead-selection Public
Select and rank the most promising antibody or TCR candidates from repertoire sequencing data.
- mixcr-shm-trees Public
Build somatic hypermutation (SHM) lineage trees from antibody repertoire sequencing data. Reconstruct clonal relationships between antibody sequences and visualize how B-cell receptor (BCR) clones diversify during somatic hypermutation and affinity maturation.
- gpu-test Public
- sequence-embeddings Public
Compute learned per-sequence vector representations for peptide and antibody/TCR datasets
- clonotype-browser Public
- import-vdj-data Public
Import V(D)J data from various formats, including MiXCR, immunoSeq, AiRR and more
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