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allow frame skips when exporting to napari format #336

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Merged
JoOkuma merged 1 commit into from
Aug 24, 2026
Merged

allow frame skips when exporting to napari format #336

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5 changes: 4 additions & 1 deletion src/tracksdata/functional/_napari.py
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Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,7 @@ def to_napari_format(
mask_key: str | None = None,
chunk_shape: tuple[int] | None = None,
buffer_cache_size: int | None = None,
allow_frame_skip: bool = False,
) -> (
tuple[
pl.DataFrame,
Expand Down Expand Up @@ -78,6 +79,8 @@ def to_napari_format(
buffer_cache_size : int, optional
The maximum number of buffers to keep in the cache for the labels layer.
If None, the default buffer cache size is used.
allow_frame_skip : bool, optional
Whether to allow frame skipping when assigning tracklet ids. If True, tracklets can skip

Examples
--------
Expand Down Expand Up @@ -106,7 +109,7 @@ def to_napari_format(

shape = _validate_shape(shape, solution_graph, "to_napari_format")

tracks_graph = solution_graph.assign_tracklet_ids(output_tracklet_id_key)
tracks_graph = solution_graph.assign_tracklet_ids(output_tracklet_id_key, allow_frame_skip=allow_frame_skip)
dict_graph = {tracks_graph[child]: tracks_graph[parent] for parent, child in tracks_graph.edge_list()}

spatial_cols = [DEFAULT_ATTR_KEYS.Z, DEFAULT_ATTR_KEYS.Y, DEFAULT_ATTR_KEYS.X][-len(shape) + 1 :]
Expand Down
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