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Collection of minor issues found by an automated bug hunt (validation edge cases, misleading errors, small inefficiencies)
bug 🚨Something isn't workingSomething isn't workingStatus: Open.#1244 In scverse/spatialdata;repr(sdata) reports the parquet row count for any points element that shares backing files, even after lazy filtering
APIAbout the API/ UXAbout the API/ UXbug 🚨Something isn't workingSomething isn't workingelement: points ⊙Points in spacePoints in spaceStatus: Open.#1243 In scverse/spatialdata;Joins on an element with duplicated index values duplicate rows (inner/right) instead of erroring
bug 🚨Something isn't workingSomething isn't workingelement: shapes ▲ShapesShapesStatus: Open.#1242 In scverse/spatialdata;concatenate(): orphan tables crash the dict form; a generator input gives a misleading error
bug 🚨Something isn't workingSomething isn't workingStatus: Open.#1241 In scverse/spatialdata;validate_table_in_spatialdata: the instance-key dtype-mismatch TypeError can never fire (
dtype is str)bug 🚨Something isn't workingSomething isn't workingStatus: Open.#1240 In scverse/spatialdata;unpad_raster() (public API) raises 'Please report this bug' on any all-zero raster
bug 🚨Something isn't workingSomething isn't workingelement: images 🌌Pictures of stuffPictures of stuffelement: labels 🏷️Regions as pixel masksRegions as pixel masksStatus: Open.#1239 In scverse/spatialdata;Multi-box bounding_box_query works on elements but crashes on a SpatialData object (TypeError: Unsupported type list)
bug 🚨Something isn't workingSomething isn't workingStatus: Open.#1238 In scverse/spatialdata;write_element(name, overwrite=True) can never overwrite an existing element, even purely in-memory tables/shapes
APIAbout the API/ UXAbout the API/ UXenhancement ✨New feature or requestNew feature or requestStatus: Open.#1237 In scverse/spatialdata;rasterize(labels, value_key=...) crashes for categorical table columns and for labels absent from the table
bug 🚨Something isn't workingSomething isn't workingelement: labels 🏷️Regions as pixel masksRegions as pixel masksStatus: Open.#1236 In scverse/spatialdata;to_polygons(labels) turns a label containing a hole into an invalid MultiPolygon with the hole counted as area
bug 🚨Something isn't workingSomething isn't workingelement: labels 🏷️Regions as pixel masksRegions as pixel masksStatus: Open.#1235 In scverse/spatialdata;spatialdata.models.force_2d() silently drops interior rings (holes) of polygons
bug 🚨Something isn't workingSomething isn't workingelement: shapes ▲ShapesShapesStatus: Open.#1234 In scverse/spatialdata;get_extent(circles, exact=True) (the default) is wrong for anisotropic/shearing transformations, while exact=False is right
bug 🚨Something isn't workingSomething isn't workingelement: shapes ▲ShapesShapesStatus: Open.#1233 In scverse/spatialdata;