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Guidance on cov_pca and EM usage + error running cov_flash

Status: Open.

#138 In stephenslab/mashr;

· lucia-ramirez opened on Nov 7, 2025

Regarding the use of mashr to evaluate the similarity of effect sizes under different conditions

Status: Open.

#136 In stephenslab/mashr;

· yrjia1015 opened on Dec 6, 2024

citation for EM approach to estimate V

Status: Open.

#135 In stephenslab/mashr;

· stephens999 opened on Nov 7, 2024

Division by zero in mash_set_data with df matrix after applying p2z

Status: Open.

#133 In stephenslab/mashr;

· dorolin opened on Nov 6, 2024

better documentation for missing data and EE and EZ model

Status: Open.

#132 In stephenslab/mashr;

· stephens999 opened on Oct 29, 2024

Is it valid to test whether two posterior means are different with t-test?

Status: Open.

#131 In stephenslab/mashr;

· MaximalLife opened on Oct 8, 2024

need better documentation for computing posterior for linear combinations of effects

Status: Open.

#130 In stephenslab/mashr;

· stephens999 opened on Oct 1, 2024

Application of mashr to smaller number of tests

Status: Open.

#129 In stephenslab/mashr;

· vinettey opened on Sep 11, 2024

eqtl analysis problem - decrease running time and memory burden - running mashr by chromosome

Status: Open.

#127 In stephenslab/mashr;

· jke20 opened on Aug 5, 2024

application to very sparse conditions, need to intersect?

Status: Open.

#126 In stephenslab/mashr;

· BradleyH017 opened on Jul 29, 2024

Error in extreme_deconvolution_rcpp when using the strong tests to set up data-driven covariances.

Status: Open.

#125 In stephenslab/mashr;

· Gongmian784 opened on Jul 26, 2024

Peforming mash with eQTL results from different variants & gene sets across conditions

Status: Open.

#122 In stephenslab/mashr;

· kimbioinfo opened on May 15, 2024