Cylindrical to Cartesian - #1

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tomc271 wants to merge 168 commits into

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cylindrical-to-cartesian

Commits on Mar 19, 2024

Add isFci to check if a field is a FCI field.
dschwoerer
committed
fa357c1
Improve isFci
dschwoerer
committed
ca59edb
Apply clang-format changes

dschwoerer
authored and
github-actions[bot]
committed
8b1fbba

Commits on Mar 20, 2024

Make isFci a member function and add missing func
dschwoerer
committed
23d309f

Commits on Apr 12, 2024

Make it explicit that this is a pointer
dschwoerer
authored
18fca62

Commits on Oct 22, 2024

Add isFci also to mesh
dschwoerer
committed
44084cc
Add const version for getCoordinates
dschwoerer
committed
cd288e9
Apply clang-format changes

dschwoerer
authored and
github-actions[bot]
committed
061b82f
Merge branch 'next' into add-is-fci
dschwoerer
committed
0a5e3da
Merge branch 'add-is-fci' into is-fci-mesh
dschwoerer
committed
5ef1268

Commits on Oct 28, 2024

Merge pull request #3001 from boutproject/is-fci-mesh
bendudson
authored
a4b8abf

Commits on Nov 6, 2024

Apply suggestions from clang-tidy
dschwoerer
committed
ececfb8

Commits on Feb 10, 2025

CI: Bump clang-tidy-review
ZedThree
committed
aebca7e
CI: Disable annotations for clang-tidy-review
ZedThree
committed
cc8c683

Commits on Feb 11, 2025

CI: Show more output of dnf5 to help debugging
dschwoerer
committed
9063bf1

Commits on Feb 12, 2025

Merge pull request #3070 from boutproject/fix-clang-tidy-review
ZedThree
authored
ef33ba9

Commits on Feb 14, 2025

Merge pull request #3071 from boutproject/ci-dnf5-more
ZedThree
authored
679058c

Commits on Mar 5, 2025

Commits on Mar 6, 2025

Apply suggestions from code review

bendudson
and
github-actions[bot]
authored
33d78fe
hypre_interface: Moved BC elimination to src/sys/hypre_interface.cxx
bendudson
committed
08b1261
test-laplace-hypre3d: Suppress BOUT++ log outputs
bendudson
committed
eea57fc
Apply black changes

bendudson
authored and
github-actions[bot]
committed
ef9fbed
Do not fail if clang-format is formatting the code
dschwoerer
committed
af72bd8
Merge pull request #3086 from boutproject/fix-clang-format
ZedThree
authored
e8e5845

Commits on Mar 10, 2025

Merge pull request #3085 from boutproject/fci-io
bendudson
authored
551fc29

Commits on Mar 11, 2025

Merge pull request #3081 from boutproject/elmpb-relaxing-phi
bendudson
authored
7bbf7f3

Commits on Mar 12, 2025

CI: Avoid issues with special characters
dschwoerer
committed
aeb83c6

Commits on Mar 13, 2025

CI: run git-clang-format until there are no more changes
dschwoerer
committed
dfa31b2
CI: use one line
dschwoerer
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e743eb0
CI: stage before we run git-clang-format again
dschwoerer
committed
1cb5277

Commits on Mar 19, 2025

Commits on Mar 27, 2025

Merge pull request #2887 from boutproject/add-is-fci
bendudson
authored
b70f79f

Commits on Apr 13, 2025

Add attributes to ADIOS2 output to "define" dimensions as names. We need this for xarray support that is designed for the NetCDF model, where dimensions are separately defined entities.
pnorbert
committed
3aed489

Commits on Apr 18, 2025

Merge pull request #3098 from pnorbert/myfixes
bendudson
authored
606a322

Commits on Apr 24, 2025

Enable alternative stencil shapes in jocobian colouring
Seimon Powell
committed
d43cea2
Change message to match rest of output
Seimon Powell
committed
19ec182
Obey the naming conventions
Seimon Powell
committed
697f729
beuler: Merge improvements
bendudson
committed
540ab7d
beuler: Limit stencil to fit in guard cells
bendudson
committed
aed011f
beuler: Fix limits on indices
bendudson
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c94150e
beuler: Apply clang-format
bendudson
committed
56298f0

Commits on Apr 26, 2025

beuler: Disable matrix_free_operator by default
bendudson
committed
348e65b

Commits on Apr 27, 2025

snes: Add documentation to manual
bendudson
committed
ea7695a

Commits on Apr 28, 2025

Merge pull request #3104 from seimtpow/feature/snes_stencil
bendudson
authored
ca7a82e
Add TokamakOptions::CylindricalCoordinatesToCartesian()
tomchapman
committed
9fba061
Add test fixture CoordinateTransformTest, and test CylindricalToCartesian
tomchapman
committed
4c50b3d
Fix CylindricalCoordinatesToCartesian()
tomchapman
committed
a63f7d6
Fix test CylindricalToCartesian
tomchapman
committed
71f9429
Calculate toroidal angle, as 2*pi/n
tomchapman
committed
06df2d6

Commits on May 3, 2025

beuler: Add output interpolation
bendudson
committed
0ced35e
snes: Make timestep adjustment tunable
bendudson
committed
8159339

Commits on May 9, 2025

periodicX communication fixes
bendudson
committed
1d7ab06

Commits on May 12, 2025

Merge pull request #3109 from boutproject/next-periodicX
bendudson
authored
255e22d

Commits on May 21, 2025

Modify generation of test values for Rxy
tomchapman
committed
49ae23b
Use a realistic set of test points as input
tomchapman
committed
5387b8a
Use standard library functions for sin() and cos()
tomchapman
committed
c1ed640
Use a vector for the toroidal angle values. Iterate over all r, theta values
tomchapman
committed
e6e1d62
Prefer const
tomchapman
committed
bd86979
Use range-based loops
tomchapman
committed
392ae19
Pass parameters by reference
tomchapman
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25c850e
FakeMeshFixture has nx=3, ny=5, nz=7
tomchapman
committed
bf20998
Use nx and ny variables, to avoid magic numbers
tomchapman
committed
7296f4b
Bug fix: toroidal angle is not an int
tomchapman
committed
19d6454

Commits on May 22, 2025

cvode: Add linear_solver option
bendudson
committed
f5d3abe
Add explanatory comments to test
tomchapman
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b9757cd
Don't instantiate Field3D from Field2D
tomchapman
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0fb5b3f
Just test min and max values
tomchapman
committed
02d4cbf

Commits on May 27, 2025

Use python f-strings

bendudson
and
dschwoerer
authored
3853d3d

Commits on May 28, 2025

Merge pull request #3112 from boutproject/cvode-linear-solver
bendudson
authored
cac159e

Commits on May 30, 2025

Fix bug where ARKODE considered all problems linear
Steven-Roberts
committed
a7771c5

Commits on Jun 3, 2025

Commits on Jun 4, 2025

Commits on Jun 5, 2025

Cast to fix first argument from SNES to void*
dschwoerer
committed
c84a2fc
Merge branch 'next' of github.com:boutproject/BOUT-dev into fix-cast-for-new-petsc
dschwoerer
committed
afd3230
Apply clang-format changes

dschwoerer
authored and
github-actions[bot]
committed
4b09458

Commits on Jun 6, 2025

Cleanup casting
dschwoerer
committed
22e2e84
Update docs for what PETSc we support
dschwoerer
committed
fd386e1
Remove old checks
dschwoerer
committed
c4c9b92

Commits on Jun 8, 2025

Add missing header
dschwoerer
committed
6506d18
Fix usage of macros
dschwoerer
committed
6d1db35

Commits on Jun 10, 2025

Add nx, ny, nz as optional arguments to FakeMeshFixture constructor
tomchapman
committed
086a8b1
Use nz=8 in CoordinateTransformTest
tomchapman
committed
0d43214

Commits on Jun 12, 2025

Commits on Jun 17, 2025

Fix PETSc version check for MatFDColoringFn typedef
ZedThree
committed
511f4a9
Move "maybe cast" macro to header for reuse
ZedThree
committed
fa2ff89
Convert macro to constexpr template function
ZedThree
committed
6a7e43e
Apply clang-format changes

ZedThree
authored and
github-actions[bot]
committed
5a14fa2

Commits on Jun 18, 2025

Commits on Jun 21, 2025

Merge pull request #3107 from boutproject/snes-timestep
bendudson
authored
520ba06
Merge branch 'next' into next-elimBE
bendudson
committed
ce417ca
Apply clang-format changes

bendudson
authored and
github-actions[bot]
committed
f880dcb

Commits on Jun 23, 2025

Commits on Jun 24, 2025

Merge pull request #3082 from boutproject/next-elimBE
bendudson
authored
e080493
Merge pull request #3132 from boutproject/flexible-fakemeshfixture
bendudson
authored
3d6a519
CI: Switch to released fedora
dschwoerer
committed
391b06b
CI: require python3-boutuils
dschwoerer
committed
1fa55d2
Merge pull request #3134 from boutproject/fedora-latest
ZedThree
authored
82a2ce0
Revert "Merge pull request #3082 from boutproject/next-elimBE"
ZedThree
committed
81befc2

Commits on Jun 25, 2025

Merge pull request #3136 from boutproject/revert-eliminate-hypre-bcs
bendudson
authored
ab0c53a

Commits on Jun 29, 2025

Handle absolute paths to options file
bendudson
committed
c6ad498

Commits on Jul 2, 2025

Fix name clash in some examples and MMS tests
ZedThree
committed
7c2c654
Fix some clang-tidy warnings
ZedThree
committed
824d095

Commits on Jul 3, 2025

Commits on Jul 7, 2025

Update src/solver/impls/snes/snes.cxx

malamast
and
ZedThree
authored
5a240c8
Apply clang-format changes

malamast
authored and
github-actions[bot]
committed
9276da0

Commits on Jul 8, 2025

Update src/solver/impls/snes/snes.cxx

malamast
and
ZedThree
authored
210a6bc
Update src/solver/impls/snes/snes.cxx

malamast
and
ZedThree
authored
e881832
Update src/solver/impls/snes/snes.cxx

malamast
and
ZedThree
authored
1339804
Update src/solver/impls/snes/snes.cxx

malamast
and
ZedThree
authored
687d21c
Update src/solver/impls/snes/snes.cxx

malamast
and
ZedThree
authored
0c8ef87
Apply clang-format changes

malamast
authored and
github-actions[bot]
committed
fd6f189

Commits on Jul 17, 2025

Commits on Jul 18, 2025

Fix more clang-tidy warnings
ZedThree
committed
b593a19
Apply clang-format changes

ZedThree
authored and
github-actions[bot]
committed
e8277e4
Bump ZedThree/clang-tidy-review from 0.20.1 to 0.21.0

dependabot[bot]
authored and
ZedThree
committed
7c586e3
Merge pull request #3150 from boutproject/bump-clang-tidy-review
ZedThree
authored
f133bdb
Merge branch 'next' into fix-input-name-clash
ZedThree
committed
60c2567
SNES: changes the pidController flag to pid_controller to match the variable naming convention.
malamast
committed
d816d78
snes: fixed some merging conflicts
malamast
committed
3be7177

Commits on Jul 24, 2025

SNES: reapplied some changes from previous commits that accidentally got deleted.
malamast
committed
751a22f
Apply clang-format changes

malamast
authored and
github-actions[bot]
committed
865c0ab

Commits on Jul 25, 2025

Update CMakeLists.txt

tbody-cfs
authored and
oparry-ukaea
committed
dd146a8
Move enable C to NetCDF

tbody-cfs
authored and
oparry-ukaea
committed
5988480
Remove top-level C

tbody-cfs
authored and
oparry-ukaea
committed
0f7c854
Add back in C language for SUNDIALS

tbody-cfs
authored and
oparry-ukaea
committed
0ab77ba

Commits on Jul 28, 2025

Merge pull request #3152 from boutproject/cmake-fix-from-master
oparry-ukaea
authored
bcfde74

Commits on Aug 4, 2025

Merge pull request #3145 from boutproject/fix-input-name-clash
ZedThree
authored
42440eb

Commits on Aug 12, 2025

Merge pull request #3146 from boutproject/snes-adaptive-pid
bendudson
authored
b8d37c2

Commits on Aug 13, 2025

snes: Print a warning if the coloring is non-symmetric.
bendudson
committed
ec1f94f
Apply clang-format changes

bendudson
authored and
github-actions[bot]
committed
cf7e043

Commits on Aug 15, 2025

Merge pull request #3159 from boutproject/snes-warn-nonsymmetric
bendudson
authored
c3217c6

Commits on Aug 19, 2025

Commits on Aug 20, 2025