FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets
browsing large volumetric data and shapes
UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images
Python code for merging and refinement of detected neurons in large 3D stacks
NeuroPack is a research-oriented neural compression toolkit for 3D microscopy volumes.
FIJI plugin for the averaging of ND (2/3/4D) images
SGT-DFO: Anisotropic Spatiotemporal Graph Transformer with Differentiable Graph-Flow Optimization for 3D+time cell tracking, mitosis lineage reconstruction, and light-sheet microscopy segmentation (CZ Biohub Challenge).
All this is part of my Projektarbeit (student project) @ TU Wien 2021
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