axonal-projections

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raqueladaia / AxoDen

Open-source tool for unbiased quantification of labeled axonal projections from microscopy images. Fluorophore- and species-agnostic, using Otsu thresholding. Available as a web app, standalone GUI, and Python package.

python neuroscience image-analysis quantification fluorescence connectomics microscopy otsu-threshold streamlit axonal-projections

Updated Jun 19, 2026
Python

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