This repo contains Bioinformatics lecture notes using Biopython.

Biobridge is a Python library for simulating biological processes and systems also analyzing them, visualising them, and interacting with them.

Machine Learning on Protein Molecule Sequence

GPU accllerated program for Neighbor-Joining algorithm of Biopython library with PyCUDA

Website contains phylogenetic network of SARS-CoV-2 genomes sampled from across the world. These genomes are closely related and under evolutionary selection in their human hosts The problem is that the usual sites that shows or talks about that topic are complicated for the people who have not studied this kind of materials related to genomics …

Optimization of operations from pairwise2 module in Biopython library

Explorando a biblioteca Biopython

Protein Synthesis Project Using Python, BioPython, and BioSQL

Python-based bioinformatics toolkit for DNA sequence analysis using the BRCA1 reference sequence.

This program takes in a .gb file (Genome Bank file) and creates a record with all of the features of the genome to create a Circular Genome Diagram.

Biopython for aligning sequences

Script for sorting FASTA sequences by clade in a given tree topology.

Biopython Intro

Bioinformatics Algorithms is a discipline at my university that aims to provide knowledge about manipulating DNA and RNA sequences using Python.

Scripts to automate general time-consuming tasks

Investigating unmapped reads within next generation sequencing data will provide additional information regarding the source of the trace microbial reads.

Developed a predictive bioinformatics service which evaluates if the new DNA/RNA strain is virulent or not with testing accuracy 99%. Extra-Tree Classifier ensemble method is used to develop the model and UI is developed with streamlit.io. The service is dockerized and deployed on EC2 instance.

This project explores three core computational challenges in bioinformatics using Python 🐍. It covers the application of the Viterbi algorithm for decoding hidden state sequences, game-theoretic strategies on DNA sequences, and advanced sequence-based games using combinatorial logic.

Fetching research papers based on a user-specified query.