bv-brc

BioSample-only RNA-seq availability + lab-only AMR phenotype checker (BV-BRC + NCBI SRA + ENA) with CSV outputs.

Antibiotic-resistance decision support from bacterial genome assemblies. Predicts likely-to-work / likely-to-fail / no-call for five antibiotics against Klebsiella pneumoniae, with calibrated confidence, evidence tiers, and an explicit no-call when the evidence is insufficient. Research prototype — confirm with lab testing.

Antimicrobial-resistance dashboard for the gut-derived pathogens behind infected pancreatic necrosis. BV-BRC genomes, ESM2 embeddings on a Daytona H100, and Fireworks observations that quote only measured numbers. Research prototype, not for clinical use.

BVBRC_GenomeDataDownloader 是一個 Python 腳本，用於從 BV-BRC 的 FTP 網站上批量下載和處理不同病症的基因組資料，並將它們轉換為 Roary 的輸入格式。