A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
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Jul 9, 2026 - Nextflow
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epitope-prediction
Here are 10 public repositories matching this topic...
ML Webapp built in WWCode Hackathon.
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Oct 18, 2020 - Jupyter Notebook
Dry-lab computational pipeline for prioritizing viral CD8+ T-cell epitopes by predicted immunogenicity across nine viral pathogens (CMV, EBV, HBV, HCV, HPV, HIV-1, IAV, DENV, SARS-CoV-2). RF/XGBoost production track; GINEConv+ESM-2 GNN research track. OpenSSF Passing.
machine-learning bioinformatics snakemake computational-biology pytorch influenza hiv computational-immunology epitope-prediction graph-neural-networks pytorch-geometric immunogenicity sars-cov-2 vaccinology human-papillomavirus epstein-barr-virus structural-immunology
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Jul 19, 2026 - Python
NetMHCIIpan MCP server for MHC Class II binding prediction
bioinformatics mcp immunology mhc immunoinformatics protein-engineering epitope-prediction model-context-protocol
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Feb 22, 2026 - Python
Python-based bioinformatics pipeline for comparative proteome analysis using overlapping peptide N-mers. Parses compressed FASTA proteomes, builds dataframe-centric peptide datasets, analyzes cross-species peptide occurrences, and generates statistical visualizations and reports with pandas and Biopython.
genomics computational-biology proteomics immunology data-pipeline immunoinformatics epitope-prediction netmhciipan
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Jun 14, 2026 - Jupyter Notebook
bioinformatics-pipeline vaccine epitope-prediction vaccine-design streamlit-dashboard insilico-computational vaccinedesign
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Jul 15, 2026 - Python
NetMHCpan MCP server for MHC Class I binding prediction
bioinformatics mcp immunology mhc immunoinformatics protein-engineering epitope-prediction model-context-protocol
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Feb 22, 2026 - Python
Structure-aware machine learning platform for PCV2 capsid epitope prediction using sequence, structural, and evolutionary features
machine-learning bioinformatics genomics structural-biology computational-biology xgboost immunoinformatics epitope-prediction protein-analysis streamlit
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Apr 14, 2026 - Python
AI-driven bioinformatics platform for viral sequence analysis, epitope discovery, and vaccine candidate design
python data-science machine-learning bioinformatics ai genomics mrna vaccine epitope-prediction streamlit-dashboard
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Apr 13, 2026 - Python
Computational pipeline for antigen-specific tolerogenic vaccine design—predicting MHC-II epitopes, scoring tolerance potential, and assembling candidate multi-epitope mRNA constructs (starting with ITP).
bioinformatics itp immunoinformatics computational-immunology epitope-prediction autoimmune-disease tolerogenic-vaccine epitope-design immune-tolerance immune-thrombocytopenia
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Apr 20, 2026 - Jupyter Notebook
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