CMSC737 - Assembly Model Testing
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Mar 12, 2014 - Python
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genomic-analysis
Here are 8 public repositories matching this topic...
Analyzing the genomic and metagenomic features of SGB748 MAGs from oral samples to uncover their role in health and peri-implant diseases through patient metadata integration.
shell bash bioinformatics microbial-genomics metagenomic-analysis phylogenetic-analysis roary prokka genomic-analysis checkm oral-microbiome metadata-integration dental-plaque peri-implantitis sgb-mags phylophlan fast-tree
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Jul 13, 2025 - Jupyter Notebook
Fast and efficient conversion of Nanopore modBAM from guppy basecaller to BED files for differential methylation and machine learning predictions
bam-files bioinformatics nanopore pipeline genomics sequencing methylation epigenetics oxford-nanopore cpg basecaller bed-format long-read-sequencing genomic-analysis methylation-analysis guppy oxford-nanopore-data oxford-nanopore-sequencing epigenetics-data modbam
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Feb 1, 2026 - Shell
A modular genomic toolkit focused on automated primer design, sequence validation, and workflow orchestration. Built for reliability, reproducibility, and scalable bioinformatics workflows.
primer bioinformatics genomics computational-biology python-toolkit pcr molecular-biology primer-design sequence-analysis dna-sequencing genomic-analysis primerlab
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Aug 15, 2026 - Python
This project was conducted as part of the HIDS-7003-01 Final Project to explore molecular and immune-related changes in Bladder Cancer using genomic data.
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Aug 19, 2025 - HTML
A comparative genomic analysis carried out with genomic tool kits such as SAMtools , BCFtools , MAFFT as well as phylogeny softwares such as iTOL.
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Feb 23, 2021
Framework for standardized bee genetics: JSON-LD metadata, ethical protocols, governance with FAIR/CARE principles. Privacy-by-design, automated compliance, tiered access. Supports reproducible genomics for conservation, agriculture, climate studies with data sovereignty.
bioinformatics computational-biology research-tool population-genetics honeybee beekeeping entomology genomic-analysis apiculture bee-gentics
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Dec 15, 2025 - Python
Data associated with Ferrante et al. 2021 - Conservation Genetics
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Apr 13, 2021 - R
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