imaging-solutions

A module with convenience functions for writing Python code that interacts with OMERO.

Medulla RMM is a radically simple IT automation and lifecycle management tool that offers the ability to handle repetitive tasks, quickly deploy applications, operating system and proactively manage them all where ever they are.

A dataset for loading zarr files to be used in machine learning training pipelines

A relabeling tool for tiled segmentation with Dask

material for the "OMERO for developers" workshop.

A module and scripts for working with OMERO

Tutorials for using scikit-image, written for The Jackson Laboratory

Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster

A deep learning model for histological image compression and decompression

Tools to visualize HCS data stored in zarr files

Convolutional Autoencoder (CAE) codec for image compression and storing in NGFF (Zarr) format.

U-Net model for glomeruli segmentation in Whole Slide Images

Saving napari ROIs into OMERO

Container for preprocessing slides using HistoQC

code and data for 'Intermediate Image Analysis - Images as Signals' workshop

ROMI library controlling the PlantImager (hardware) or the VirtualPlantImager (Blender) to acquire images of (virtual) single potted plants.

NOTICE OF CONSOLIDATION the 20 pipelines of the QCAUS suites are undergoing consolidation Core 'Ford 2026' algorithms remain the proprietary IP of Tony Eugene Ford.

Notebooks for the workshop Advanced Machine learning with Python

Repo for generating OMERO reports/dashboards